Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G021900 Manihot esculenta HOM05D021322 ORTHO05D001895 4.1e-56 221.1 107 100.0
Manes.07G022100 Manihot esculenta HOM05D021322 ORTHO05D001895 1.2e-50 203.0 107 93.5
Manes.10G120700 Manihot esculenta HOM05D021322 ORTHO05D001895 9.0e-27 123.6 108 57.4
Manes.10G120901 Manihot esculenta HOM05D021322 ORTHO05D001895 3.4e-26 121.7 104 56.7
Manes.10G124900 Manihot esculenta HOM05D021322 ORTHO05D001895 2.2e-25 119.0 108 55.6
Manes.10G125000 Manihot esculenta HOM05D021322 ORTHO05D001895 4.9e-25 117.9 104 53.8
Manes.10G124600 Manihot esculenta HOM05D002599 ORTHO05D001895 1.0e-14 83.6 105 41.0
Manes.10G124500 Manihot esculenta HOM05D002599 ORTHO05D001895 2.3e-14 82.4 105 39.0
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 5.1e-14 81.3 106 42.5
Thecc.02G090900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.9e-13 79.3 105 39.0
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-12 75.5 105 37.1
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 4.8e-12 74.7 102 40.2
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 8.2e-12 73.9 105 37.1
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-11 73.6 105 37.1
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-11 73.2 107 42.1
COL.COLO4_17588 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.4e-11 72.4 106 34.0
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 2.4e-11 72.4 105 36.2
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.0e-11 71.6 105 35.2
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.9e-11 70.9 103 39.8
Manes.10G120000 Manihot esculenta HOM05D002599 ORTHO05D001895 1.2e-10 70.1 104 37.5
Potri.004G219600 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-10 70.1 107 36.4
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.5e-10 69.7 111 38.7
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-10 68.9 107 36.4
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.6e-10 67.4 107 34.6
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 1.7e-09 66.2 102 38.2
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 3.8e-09 65.1 107 37.4
Gohir.A04G121884 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.9e-09 64.7 104 39.4
Potri.003G010664 Populus trichocarpa HOM05D011361 ORTHO05D015735 4.9e-09 64.7 116 37.9
Gohir.D04G163166 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.5e-09 64.3 104 38.5
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 8.4e-09 63.9 107 33.6
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.4e-09 63.9 107 33.6
Gorai.012G151200 Gossypium raimondii HOM05D002599 ORTHO05D001895 8.4e-09 63.9 106 38.7
Thecc.05G107200 Theobroma cacao HOM05D002599 ORTHO05D025152 8.4e-09 63.9 109 32.1
Duzib052G1144 Durio zibethinus HOM05D002599 ORTHO05D001895 1.4e-08 63.2 105 36.2
Duzib052G0486 Durio zibethinus HOM05D002599 ORTHO05D001895 1.9e-08 62.8 105 37.1
Potri.003G010565 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.9e-08 62.8 106 36.8
Potri.003G010598 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.9e-08 62.8 106 36.8
Sabra03G0005600 Salix brachista HOM05D011361 ORTHO05D015735 1.9e-08 62.8 110 37.3
Sabra03G0005700 Salix brachista HOM05D011361 ORTHO05D015735 1.9e-08 62.8 110 37.3
Gohir.A04G130712 Gossypium hirsutum HOM05D019153 ORTHO05D001895 2.5e-08 62.4 101 32.7
Potri.003G010499 Populus trichocarpa HOM05D011361 ORTHO05D015735 3.2e-08 62.0 109 38.5
Gohir.A12G027200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-08 61.2 107 32.7
Gohir.D12G026700 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.5e-08 61.2 107 32.7
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 5.5e-08 61.2 93 36.6
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.1e-08 60.8 106 34.9
Potri.004G220300 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.1e-08 60.8 107 33.6
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.1e-08 60.8 83 37.3
Potri.003G010730 Populus trichocarpa HOM05D011361 ORTHO05D015735 9.3e-08 60.5 112 35.7
Potri.003G010466 Populus trichocarpa HOM05D011361 ORTHO05D015735 1.2e-07 60.1 106 35.8
Gohir.A04G121842 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.6e-07 59.7 105 38.1
Gohir.D12G026733 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.1e-07 59.3 107 32.7
Gorai.012G167300 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.1e-07 59.3 101 34.7
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.1e-07 59.3 104 33.7
AUR62019864 Chenopodium quinoa HOM05D002599 ORTHO05D001895 2.7e-07 58.9 103 35.0
Potri.003G010433 Populus trichocarpa HOM05D011361 ORTHO05D015735 2.7e-07 58.9 111 36.9
Potri.003G010532 Populus trichocarpa HOM05D011361 ORTHO05D015735 2.7e-07 58.9 111 36.0
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 3.5e-07 58.5 105 35.2
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.6e-07 58.2 105 36.2
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.0e-07 57.8 105 32.4
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.0e-06 57.0 105 36.2
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.0e-06 57.0 91 34.1
Gohir.A12G027266 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.3e-06 56.6 107 31.8
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 1.3e-06 56.6 105 34.3
Gohir.A04G133150 Gossypium hirsutum HOM05D002599 ORTHO05D029872 1.8e-06 56.2 105 30.5
Sabra03G0005400 Salix brachista HOM05D011361 ORTHO05D015735 1.8e-06 56.2 105 34.3
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-06 55.8 105 33.3
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.3e-06 55.8 105 35.2
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.3e-06 55.8 105 35.2
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 2.3e-06 55.8 103 31.1
Gorai.008G027000 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.0e-06 55.5 96 35.4
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-06 55.5 86 38.4
Sabra01G0166800 Salix brachista HOM05D002599 ORTHO05D001895 3.0e-06 55.5 103 28.2
Gohir.A04G132600 Gossypium hirsutum HOM05D002599 ORTHO05D012670 3.9e-06 55.1 103 32.0
Gorai.012G168700 Gossypium raimondii HOM05D002599 ORTHO05D029872 3.9e-06 55.1 105 30.5
COL.COLO4_17753 Corchorus olitorius HOM05D002599 ORTHO05D001895 6.7e-06 54.3 107 35.5
Gohir.D04G176568 Gossypium hirsutum HOM05D002599 ORTHO05D012670 6.7e-06 54.3 105 29.5
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 6.7e-06 54.3 105 32.4
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 6.7e-06 54.3 103 31.1


User provided reference genes

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