Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 7.8e-94 347.1 168 100.0
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 7.1e-87 323.9 168 93.5
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 1.2e-28 130.6 116 52.6
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.5e-28 130.2 117 55.6
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 8.3e-27 124.4 116 52.6
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 1.4e-26 123.6 119 49.6
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 4.1e-26 122.1 116 51.7
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 4.1e-26 122.1 119 49.6
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.1e-26 122.1 117 53.0
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 7.0e-26 121.3 116 50.9
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.6e-25 120.2 116 50.9
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.6e-25 120.2 116 50.9
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 1.3e-24 117.1 116 50.0
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 1.7e-24 116.7 116 51.7
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.7e-24 116.7 121 51.2
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 2.2e-24 116.3 116 49.1
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 4.2e-23 112.1 122 52.5
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 9.4e-23 110.9 116 47.4
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 2.1e-22 109.8 124 46.0
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 2.1e-22 109.8 121 47.1
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 2.0e-20 103.2 121 46.3
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 4.1e-18 95.5 102 46.1
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 4.1e-18 95.5 126 43.7
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 4.1e-18 95.5 126 43.7
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 7.0e-18 94.7 123 41.5
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.2e-17 94.0 126 42.9
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 1.6e-17 93.6 123 40.7
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 2.0e-17 93.2 122 41.8
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.6e-15 85.1 119 37.8
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.3e-15 84.7 119 37.8
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-14 83.6 121 40.5
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 2.1e-14 83.2 121 41.3
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-14 82.8 120 39.2
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 4.7e-14 82.0 126 33.3
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 4.7e-14 82.0 127 36.2
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-13 80.5 120 40.0
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.3e-13 79.7 117 32.5
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.8e-13 78.2 116 40.5
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.4e-12 75.5 113 36.3
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.7e-12 75.1 117 30.8
Gohir.1Z049336 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.5e-12 74.7 117 30.8
Gohir.D10G057100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.5e-12 74.7 117 30.8
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 7.5e-12 74.7 117 31.6
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 7.5e-12 74.7 115 37.4
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 9.8e-12 74.3 117 30.8
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.3e-11 73.9 121 35.5
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.3e-11 73.9 117 36.8
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.7e-11 73.6 117 30.8
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-11 73.6 117 34.2
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.2e-11 73.2 117 29.9
Gorai.011G060700 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.2e-11 73.2 118 32.2
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-11 73.2 112 33.9
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.7e-11 72.4 117 34.2
Gohir.A10G054800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.9e-11 72.0 120 34.2
Gohir.D10G056900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.9e-11 72.0 118 31.4
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 6.4e-11 71.6 115 37.4
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.3e-11 71.2 148 32.4
Gorai.011G060600 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.4e-10 70.5 119 33.6
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.4e-10 70.5 122 33.6
Gohir.A10G054900 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-10 70.1 118 32.2
Gohir.D10G056800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.8e-10 70.1 119 33.6
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 3.2e-10 69.3 115 33.9
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 3.2e-10 69.3 126 33.3
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.1e-10 68.9 113 31.9
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.0e-10 68.2 119 36.1
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.0e-10 68.2 116 33.6
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.0e-10 68.2 116 33.6
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.0e-10 68.2 121 33.1
Gohir.A10G054950 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.2e-10 67.8 82 35.4
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 9.2e-10 67.8 120 28.3
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 1.2e-09 67.4 122 32.0
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-09 67.4 109 32.1
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.6e-09 67.0 121 33.1
Gohir.A10G055150 Gossypium hirsutum HOM05D008353 ORTHO05D011820 2.0e-09 66.6 117 29.1
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.0e-09 66.6 120 33.3
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.7e-09 66.2 120 31.7
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 2.7e-09 66.2 109 33.9
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 2.7e-09 66.2 119 36.1
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.5e-09 65.9 118 33.9
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.5e-09 65.9 110 32.7
Thecc.10G017100 Theobroma cacao HOM05D002599 ORTHO05D001895 3.5e-09 65.9 118 33.9
Gohir.A03G192100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.6e-09 65.5 119 32.8
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.9e-09 65.1 121 32.2
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.8e-09 64.7 110 30.9
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.8e-09 64.7 113 31.0
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.0e-08 64.3 119 33.6
Gohir.A10G055100 Gossypium hirsutum HOM05D008353 ORTHO05D011820 1.7e-08 63.5 117 28.2
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.7e-08 63.5 113 31.9
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-08 63.2 116 31.0
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-08 63.2 119 30.3
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.3e-08 63.2 114 30.7
TWI14G1236 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 2.3e-08 63.2 117 32.5
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 3.0e-08 62.8 107 34.6
COL.COLO4_11449 Corchorus olitorius HOM05D006446 ORTHO05D007832 3.0e-08 62.8 120 30.8
Gohir.A03G192400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.0e-08 62.8 133 33.1
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 6.6e-08 61.6 115 30.4
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 8.6e-08 61.2 116 30.2
Potri.015G016450 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.6e-08 61.2 112 32.1
Potri.015G016901 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.1e-07 60.8 111 29.7
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.9e-07 60.1 121 29.8
Gorai.008G022100 Gossypium raimondii HOM05D008353 ORTHO05D011820 2.5e-07 59.7 86 32.6
Gohir.D12G021800 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.3e-07 59.3 86 32.6
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 3.3e-07 59.3 126 29.4
COL.COLO4_11744 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.3e-07 58.2 78 33.3
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.3e-07 58.2 116 30.2
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.3e-07 58.2 116 30.2
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.3e-07 58.2 116 30.2
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.3e-07 58.2 114 28.9
Potri.015G017000 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.3e-07 58.2 111 29.7
Potri.015G016700 Populus trichocarpa HOM05D002599 ORTHO05D001895 9.5e-07 57.8 110 29.1
Potri.004G219900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-06 57.0 124 25.8
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-06 57.0 111 29.7
Gorai.005G241200 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.1e-06 56.6 133 31.6
Gorai.005G241300 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.1e-06 56.6 120 31.7


User provided reference genes

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