Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G021400 Manihot esculenta HOM05D008353 ORTHO05D001895 2.3e-66 255.4 123 100.0
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 4.9e-45 184.5 123 70.7
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 6.4e-45 184.1 123 70.7
Potri.004G220400 Populus trichocarpa HOM05D008353 ORTHO05D001895 2.1e-32 142.5 117 57.3
Potri.003G010763 Populus trichocarpa HOM05D008353 ORTHO05D001895 4.8e-32 141.4 115 57.4
Potri.004G220550 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.1e-31 140.2 117 56.4
Potri.004G220700 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.1e-31 140.2 117 56.4
Sabra01G0166900 Salix brachista HOM05D008353 ORTHO05D001895 5.8e-30 134.4 117 56.4
Potri.003G011200 Populus trichocarpa HOM05D008353 ORTHO05D001895 1.3e-29 133.3 115 53.9
Sabra01G0167300 Salix brachista HOM05D008353 ORTHO05D001895 2.9e-29 132.1 117 53.8
Sabra01G0167000 Salix brachista HOM05D008353 ORTHO05D001895 1.2e-27 126.7 117 52.1
Manes.10G124700 Manihot esculenta HOM05D008353 ORTHO05D011820 6.0e-27 124.4 118 50.0
Manes.07G021800 Manihot esculenta HOM05D008353 ORTHO05D001895 1.3e-24 116.7 116 51.7
Manes.07G022000 Manihot esculenta HOM05D008353 ORTHO05D001895 3.7e-24 115.2 117 53.0
Atru.chr13.1025 Acer truncatum HOM05D008353 ORTHO05D001895 1.8e-23 112.8 116 49.1
Atru.chr13.1023 Acer truncatum HOM05D008353 ORTHO05D001895 2.4e-23 112.5 116 49.1
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 4.5e-22 108.2 118 46.6
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.0e-21 107.1 120 48.3
Atru.chr8.2426 Acer truncatum HOM05D008353 ORTHO05D001895 1.4e-20 103.2 120 45.8
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 9.3e-20 100.5 118 47.5
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.3e-17 92.0 118 38.1
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.7e-17 91.3 116 39.7
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.4e-17 90.9 116 39.7
Thecc.02G026200 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-16 90.1 116 41.4
Thecc.02G026400 Theobroma cacao HOM05D002599 ORTHO05D001895 6.3e-16 87.8 116 41.4
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.1e-15 87.0 118 42.4
Gohir.D02G213100 Gossypium hirsutum HOM05D008353 ORTHO05D001895 1.4e-15 86.7 119 41.2
Gorai.005G241000 Gossypium raimondii HOM05D008353 ORTHO05D001895 1.4e-15 86.7 119 41.2
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.9e-15 84.3 119 41.2
Atru.chr6.125 Acer truncatum HOM05D002599 ORTHO05D001895 1.5e-14 83.2 81 48.1
Thecc.10G017400 Theobroma cacao HOM05D002599 ORTHO05D001895 3.4e-14 82.0 115 34.8
Gohir.A03G192300 Gossypium hirsutum HOM05D008353 ORTHO05D001895 4.5e-14 81.6 119 39.5
Thecc.02G026300 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-14 81.3 116 37.9
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 5.9e-14 81.3 117 40.2
Thecc.07G072800 Theobroma cacao HOM05D008353 ORTHO05D001895 7.7e-14 80.9 129 37.2
Thecc.10G017800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-13 80.5 115 34.8
Thecc.02G026500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-13 80.1 115 38.3
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.9e-13 79.0 120 37.5
Thecc.02G091600 Theobroma cacao HOM05D008353 ORTHO05D001895 5.0e-13 78.2 117 36.8
Gohir.D02G213200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 6.5e-13 77.8 120 39.2
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-13 77.8 117 38.5
Potri.014G068000 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.5e-13 77.8 114 36.0
Gorai.005G241100 Gossypium raimondii HOM05D008353 ORTHO05D001895 1.4e-12 76.6 120 38.3
COL.COLO4_11748 Corchorus olitorius HOM05D008353 ORTHO05D001895 4.2e-12 75.1 113 32.7
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 4.2e-12 75.1 120 37.5
Potri.003G015900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-11 73.2 115 34.8
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 3.6e-11 72.0 122 37.7
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.7e-11 71.6 115 37.4
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.7e-11 71.6 115 37.4
Thecc.02G092200 Theobroma cacao HOM05D002599 ORTHO05D001895 6.1e-11 71.2 109 33.0
Potri.003G017566 Populus trichocarpa HOM05D002599 ORTHO05D001895 7.9e-11 70.9 115 33.0
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-10 70.5 118 33.9
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-10 70.5 118 32.2
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.0e-10 70.5 119 35.3
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.0e-10 70.5 115 34.8
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-10 69.7 118 31.4
COL.COLO4_17739 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.3e-10 69.3 112 33.9
Sabra12G0018100 Salix brachista HOM05D002599 ORTHO05D001895 2.3e-10 69.3 110 39.1
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.0e-10 68.9 108 33.3
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-10 68.6 108 35.2
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.9e-10 68.6 108 29.6
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 3.9e-10 68.6 112 31.2
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.1e-10 68.2 120 34.2
Potri.003G011132 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.1e-10 68.2 118 34.7
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.7e-10 67.8 120 35.0
Potri.003G018400 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.7e-10 67.8 115 30.4
Potri.007G099100 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.8e-10 67.4 117 30.8
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 8.8e-10 67.4 110 32.7
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 1.1e-09 67.0 110 31.8
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.1e-09 67.0 120 35.0
Thecc.10G017300 Theobroma cacao HOM05D009631 ORTHO05D011824 1.1e-09 67.0 113 33.6
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.5e-09 66.6 120 34.2
Gohir.A02G159400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-09 66.2 115 35.7
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 2.0e-09 66.2 115 33.0
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-09 65.9 111 32.4
Sabra03G0008900 Salix brachista HOM05D002599 ORTHO05D001895 3.3e-09 65.5 115 33.0
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 4.4e-09 65.1 117 32.5
Thecc.01G060200 Theobroma cacao HOM05D002599 ORTHO05D001895 7.4e-09 64.3 116 35.3
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 9.7e-09 63.9 102 35.3
Thecc.02G091900 Theobroma cacao HOM05D008353 ORTHO05D011820 9.7e-09 63.9 118 33.1
Atru.chr6.704 Acer truncatum HOM05D002599 ORTHO05D001895 1.3e-08 63.5 107 34.6
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-08 63.5 116 33.6
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-08 63.5 120 30.8
Sabra03G0009200 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-08 63.2 115 32.2
Sabra03G0009500 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-08 63.2 116 32.8
Sabra03G0009800 Salix brachista HOM05D002599 ORTHO05D001895 1.7e-08 63.2 115 32.2
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.2e-08 62.8 115 31.3
Potri.004G218101 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-08 62.8 115 32.2
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 2.2e-08 62.8 115 33.9
Potri.003G010700 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-08 62.4 118 34.7
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-08 61.6 116 32.8
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-08 61.6 116 32.8
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-08 61.6 116 32.8
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 4.8e-08 61.6 116 32.8
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.3e-08 61.2 114 28.9
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.3e-08 61.2 114 28.9
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.3e-08 61.2 114 28.9
Thecc.02G091700 Theobroma cacao HOM05D008353 ORTHO05D011820 1.8e-07 59.7 118 31.4
Gohir.A10G055066 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.1e-07 58.5 116 30.2
Potri.004G221600 Populus trichocarpa HOM05D008886 ORTHO05D001895 5.3e-07 58.2 121 34.7
Gohir.A10G055200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.0e-07 57.8 117 27.4
Gohir.D10G057000 Gossypium hirsutum HOM05D008353 ORTHO05D011820 7.0e-07 57.8 119 30.3
COL.COLO4_11747 Corchorus olitorius HOM05D008353 ORTHO05D011820 9.1e-07 57.4 120 30.8
Gorai.011G061000 Gossypium raimondii HOM05D008353 ORTHO05D011820 9.1e-07 57.4 118 30.5
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 9.1e-07 57.4 117 28.2
Duzib147G0900 Durio zibethinus HOM05D002599 ORTHO05D001895 1.2e-06 57.0 92 39.1
Gorai.011G060900 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.2e-06 57.0 118 29.7
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.2e-06 57.0 108 33.3
Sabra01G0167700 Salix brachista HOM05D008886 ORTHO05D001895 1.2e-06 57.0 119 32.8
Thecc.04G012700 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-06 57.0 93 36.6
Gorai.011G061100 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.5e-06 56.6 116 28.4
Gorai.011G061300 Gossypium raimondii HOM05D008353 ORTHO05D011820 1.5e-06 56.6 119 30.3
Manes.10G126325 Manihot esculenta HOM05D002599 ORTHO05D001895 1.5e-06 56.6 102 30.4
Thecc.02G091000 Theobroma cacao HOM05D002599 ORTHO05D001895 1.5e-06 56.6 110 29.1
Potri.004G219800 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.0e-06 56.2 119 32.8
Sabra15G0012400 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-06 56.2 115 33.0
Gorai.012G167400 Gossypium raimondii HOM05D019153 ORTHO05D047868 2.6e-06 55.8 85 38.8
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 2.6e-06 55.8 115 32.2
Gohir.D04G176000 Gossypium hirsutum HOM05D019153 ORTHO05D047868 3.4e-06 55.5 85 38.8
Gohir.D10G057200 Gossypium hirsutum HOM05D008353 ORTHO05D011820 3.4e-06 55.5 119 29.4
Gohir.D10G057133 Gossypium hirsutum HOM05D008353 ORTHO05D011820 4.5e-06 55.1 116 27.6
Sabra15G0012300 Salix brachista HOM05D002599 ORTHO05D001895 4.5e-06 55.1 115 32.2
Gohir.A10G055250 Gossypium hirsutum HOM05D008353 ORTHO05D011820 5.9e-06 54.7 119 29.4
Thecc.02G091400 Theobroma cacao HOM05D008353 ORTHO05D011820 7.7e-06 54.3 118 28.8


User provided reference genes

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