Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 4.6e-82 307.8 147 100.0
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 8.4e-68 260.4 132 94.7
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 7.1e-67 257.3 132 93.9
Manes.07G020700 Manihot esculenta HOM05D016843 ORTHO05D001895 2.4e-62 242.3 132 87.9
Manes.07G017475 Manihot esculenta HOM05D016843 ORTHO05D001895 1.6e-18 96.7 126 42.9
Manes.10G126200 Manihot esculenta HOM05D016843 ORTHO05D001895 1.8e-17 93.2 128 43.0
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 2.3e-17 92.8 123 39.8
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 8.9e-17 90.9 125 40.0
Manes.10G126000 Manihot esculenta HOM05D016843 ORTHO05D001895 1.2e-16 90.5 128 42.2
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.2e-16 90.5 123 39.0
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 4.4e-16 88.6 126 38.1
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.3e-15 87.0 126 38.9
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 2.2e-15 86.3 125 37.6
Potri.003G016733 Populus trichocarpa HOM05D009888 ORTHO05D001895 2.2e-15 86.3 126 37.3
Manes.07G017350 Manihot esculenta HOM05D016843 ORTHO05D001895 4.9e-15 85.1 122 38.5
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-14 83.6 116 38.8
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.4e-14 83.6 116 38.8
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.4e-14 83.6 116 38.8
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 4.1e-14 82.0 123 39.8
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-13 80.1 128 36.7
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 2.0e-13 79.7 119 40.3
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-12 77.0 121 36.4
Potri.003G013601 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.7e-12 76.6 126 35.7
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.3e-12 76.3 117 35.0
Manes.10G121200 Manihot esculenta HOM05D009888 ORTHO05D001895 2.9e-12 75.9 125 35.2
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 2.9e-12 75.9 127 33.9
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 3.8e-12 75.5 119 38.7
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-12 75.1 121 36.4
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.0e-12 75.1 121 36.4
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.3e-11 72.4 127 33.1
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.3e-11 72.0 117 38.5
Sabra03G0006900 Salix brachista HOM05D009888 ORTHO05D001895 7.3e-11 71.2 128 33.6
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 9.5e-11 70.9 117 33.3
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.2e-10 70.5 123 36.6
Thecc.02G027800 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-10 70.1 126 34.1
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.8e-10 69.3 121 35.5
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.0e-10 67.8 96 40.6
Potri.011G005200 Populus trichocarpa HOM05D008886 ORTHO05D001895 1.0e-09 67.4 93 38.7
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.8e-09 66.6 117 33.3
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.8e-09 66.6 117 33.3
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 1.8e-09 66.6 125 33.6
Gohir.A04G130718 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-09 66.2 128 36.7
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 3.1e-09 65.9 88 35.2
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 3.1e-09 65.9 88 35.2
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 3.1e-09 65.9 88 35.2
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.1e-09 65.9 127 33.9
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 3.1e-09 65.9 126 35.7
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 6.8e-09 64.7 127 33.9
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 6.8e-09 64.7 127 33.9
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.8e-09 64.7 117 36.8
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.8e-09 64.7 90 40.0
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 6.8e-09 64.7 117 31.6
Potri.004G011000 Populus trichocarpa HOM05D008886 ORTHO05D001895 8.9e-09 64.3 109 34.9
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 1.2e-08 63.9 127 32.3
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 1.5e-08 63.5 90 37.8
Manes.02G167801 Manihot esculenta HOM05D009888 ORTHO05D001895 1.5e-08 63.5 128 30.5
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 2.0e-08 63.2 126 34.1
Sabra03G0007200 Salix brachista HOM05D009888 ORTHO05D001895 2.0e-08 63.2 125 32.8
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 2.0e-08 63.2 109 37.6
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.6e-08 62.8 121 33.1
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 2.6e-08 62.8 96 36.5
Gohir.A12G043200 Gossypium hirsutum HOM05D002599 ORTHO05D001895 4.4e-08 62.0 123 33.3
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 4.4e-08 62.0 126 33.3
Thecc.04G013200 Theobroma cacao HOM05D002599 ORTHO05D001895 4.4e-08 62.0 99 37.4
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.8e-08 61.6 95 37.9
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 7.5e-08 61.2 96 35.4
Gorai.012G167500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.3e-07 60.5 98 38.8
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-07 60.5 117 33.3
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-07 60.5 103 35.0
Thecc.02G091800 Theobroma cacao HOM05D008353 ORTHO05D001895 1.7e-07 60.1 125 30.4
Gohir.D04G176033 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-07 59.7 98 38.8
Gohir.D12G042600 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.2e-07 59.7 121 34.7
Gorai.008G044600 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.2e-07 59.7 121 34.7
Potri.012G013501 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.2e-07 59.7 87 40.2
Ciclev10003284m.g Citrus clementina HOM05D022543 ORTHO05D001895 2.9e-07 59.3 110 30.9
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 2.9e-07 59.3 126 34.1
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.4e-07 58.2 103 33.0
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.1e-06 57.4 98 37.8
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.4e-06 57.0 91 38.5
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 1.4e-06 57.0 92 39.1
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 1.9e-06 56.6 120 29.2
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 1.9e-06 56.6 123 30.9
COL.COLO4_17754 Corchorus olitorius HOM05D002599 ORTHO05D001895 3.2e-06 55.8 91 36.3
Gohir.A03G192200 Gossypium hirsutum HOM05D008353 ORTHO05D001895 3.2e-06 55.8 122 25.4
Potri.011G005500 Populus trichocarpa HOM05D008886 ORTHO05D001895 3.2e-06 55.8 87 34.5
Potri.012G012950 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.2e-06 55.8 86 38.4
Potri.007G119400 Populus trichocarpa HOM05D008886 ORTHO05D001895 4.1e-06 55.5 88 36.4
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 5.4e-06 55.1 88 37.5
Potri.012G012850 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.4e-06 55.1 86 38.4


User provided reference genes

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