Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G020550 Manihot esculenta HOM05D016843 ORTHO05D001895 6.0e-73 277.3 133 100.0
Manes.07G020500 Manihot esculenta HOM05D016843 ORTHO05D001895 3.0e-72 275.0 133 99.2
Manes.07G021000 Manihot esculenta HOM05D016843 ORTHO05D001895 2.2e-67 258.8 132 93.9
Manes.07G020700 Manihot esculenta HOM05D016843 ORTHO05D001895 7.4e-63 243.8 133 88.0
Manes.10G126200 Manihot esculenta HOM05D016843 ORTHO05D001895 1.0e-19 100.5 129 45.0
Manes.07G017475 Manihot esculenta HOM05D016843 ORTHO05D001895 1.3e-19 100.1 130 43.8
Manes.10G126000 Manihot esculenta HOM05D016843 ORTHO05D001895 1.1e-18 97.1 129 44.2
Potri.003G011875 Populus trichocarpa HOM05D009888 ORTHO05D001895 4.2e-18 95.1 120 40.8
Potri.003G014750 Populus trichocarpa HOM05D009888 ORTHO05D001895 2.8e-17 92.4 120 40.0
Manes.07G017350 Manihot esculenta HOM05D016843 ORTHO05D001895 1.4e-16 90.1 123 39.0
Potri.003G021250 Populus trichocarpa HOM05D009888 ORTHO05D001895 8.9e-16 87.4 123 39.0
Potri.003G013026 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.5e-15 86.7 123 37.4
Potri.003G016733 Populus trichocarpa HOM05D009888 ORTHO05D001895 1.5e-15 86.7 123 37.4
Manes.10G121100 Manihot esculenta HOM05D009888 ORTHO05D001895 1.3e-14 83.6 121 38.0
Gohir.A13G015300 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.7e-14 82.0 116 38.8
Gohir.D13G016500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 3.7e-14 82.0 116 38.8
Gorai.013G018200 Gossypium raimondii HOM05D002599 ORTHO05D001895 3.7e-14 82.0 116 38.8
Manes.10G125112 Manihot esculenta HOM05D009888 ORTHO05D001895 4.9e-14 81.6 121 36.4
Potri.004G219450 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.8e-13 79.7 128 36.7
Sabra03G0007500 Salix brachista HOM05D009888 ORTHO05D001895 3.2e-13 79.0 124 35.5
Manes.07G019800 Manihot esculenta HOM05D009888 ORTHO05D001895 4.1e-13 78.6 119 39.5
Manes.07G019700 Manihot esculenta HOM05D009888 ORTHO05D001895 5.4e-13 78.2 120 40.0
Gorai.011G111100 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.0e-12 76.3 117 36.8
COL.COLO4_25714 Corchorus olitorius HOM05D002599 ORTHO05D001895 2.7e-12 75.9 117 35.0
Potri.003G013601 Populus trichocarpa HOM05D009888 ORTHO05D001895 3.5e-12 75.5 123 35.0
Gohir.D10G101400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.8e-12 74.3 117 36.8
Gohir.A10G235900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 1.0e-11 73.9 117 36.8
Thecc.02G091300 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-11 73.2 119 37.8
Thecc.10G017900 Theobroma cacao HOM05D002599 ORTHO05D001895 1.7e-11 73.2 117 33.3
Thecc.02G091200 Theobroma cacao HOM05D002599 ORTHO05D001895 3.9e-11 72.0 117 38.5
Sabra03G0006900 Salix brachista HOM05D009888 ORTHO05D001895 6.6e-11 71.2 125 33.6
Gorai.011G286700 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.1e-10 70.5 116 34.5
Sabra03G0007300 Salix brachista HOM05D009888 ORTHO05D001895 2.5e-10 69.3 124 34.7
Thecc.10G017500 Theobroma cacao HOM05D002599 ORTHO05D001895 4.3e-10 68.6 117 32.5
Potri.012G013700 Populus trichocarpa HOM05D002599 ORTHO05D001895 5.6e-10 68.2 96 40.6
COL.COLO4_11745 Corchorus olitorius HOM05D002599 ORTHO05D001895 7.3e-10 67.8 123 30.9
Gohir.D03G021100 Gossypium hirsutum HOM05D002599 ORTHO05D001895 7.3e-10 67.8 117 33.3
Gorai.003G022700 Gossypium raimondii HOM05D002599 ORTHO05D001895 7.3e-10 67.8 117 33.3
Manes.10G121200 Manihot esculenta HOM05D009888 ORTHO05D001895 9.5e-10 67.4 121 33.1
Ciclev10003864m.g Citrus clementina HOM05D022543 ORTHO05D001895 1.2e-09 67.0 94 37.2
Potri.015G016100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.6e-09 66.6 99 38.4
Thecc.02G092100 Theobroma cacao HOM05D002599 ORTHO05D001895 1.6e-09 66.6 119 35.3
Atru.chr4.3201 Acer truncatum HOM05D002599 ORTHO05D001895 2.8e-09 65.9 101 32.7
Atru.chr4.3202 Acer truncatum HOM05D002599 ORTHO05D001895 2.8e-09 65.9 101 32.7
AUR62019765 Chenopodium quinoa HOM05D002599 ORTHO05D001895 2.8e-09 65.9 90 38.9
Gohir.D02G236400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.8e-09 65.9 113 38.1
Gorai.005G264500 Gossypium raimondii HOM05D002599 ORTHO05D001895 2.8e-09 65.9 113 38.1
Potri.015G016000 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.8e-09 65.9 95 40.0
Thecc.02G024800 Theobroma cacao HOM05D002599 ORTHO05D001895 2.8e-09 65.9 118 34.7
Potri.003G011066 Populus trichocarpa HOM05D002599 ORTHO05D001895 4.7e-09 65.1 117 36.8
Sabra15G0012500 Salix brachista HOM05D002599 ORTHO05D001895 4.7e-09 65.1 110 35.5
Thecc.02G018800 Theobroma cacao HOM05D002599 ORTHO05D001895 4.7e-09 65.1 114 36.0
Atru.chr4.3203 Acer truncatum HOM05D002599 ORTHO05D001895 6.1e-09 64.7 88 35.2
Sabra03G0007600 Salix brachista HOM05D009888 ORTHO05D001895 1.8e-08 63.2 124 32.3
Atru.chr6.1076 Acer truncatum HOM05D008886 ORTHO05D001895 2.3e-08 62.8 94 40.4
Gohir.A01G005400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.3e-08 62.8 123 31.7
Thecc.02G091500 Theobroma cacao HOM05D008353 ORTHO05D001895 4.0e-08 62.0 125 34.4
COL.COLO4_25716 Corchorus olitorius HOM05D002599 ORTHO05D001895 5.2e-08 61.6 124 31.5
Gohir.D01G005500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 5.2e-08 61.6 123 31.7
Gorai.002G006400 Gossypium raimondii HOM05D002599 ORTHO05D001895 5.2e-08 61.6 123 31.7
Sabra03G0006400 Salix brachista HOM05D002599 ORTHO05D001895 5.2e-08 61.6 120 35.0
Potri.015G015501 Populus trichocarpa HOM05D002599 ORTHO05D001895 6.8e-08 61.2 103 35.0
TWI75G1004 Tripterygium wilfordii HOM05D002599 ORTHO05D001895 6.8e-08 61.2 89 41.6
Sabra15G0013000 Salix brachista HOM05D002599 ORTHO05D001895 8.9e-08 60.8 96 35.4
Sabra15G0012700 Salix brachista HOM05D002599 ORTHO05D001895 1.2e-07 60.5 85 38.8
Ciclev10003852m.g Citrus clementina HOM05D022543 ORTHO05D001895 1.5e-07 60.1 94 33.0
Gohir.A01G182400 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-07 59.7 101 30.7
Gohir.A03G214900 Gossypium hirsutum HOM05D002599 ORTHO05D001895 2.0e-07 59.7 89 41.6
Manes.10G124100 Manihot esculenta HOM05D008353 ORTHO05D001895 2.0e-07 59.7 127 33.1
Potri.014G067900 Populus trichocarpa HOM05D002599 ORTHO05D001895 2.6e-07 59.3 117 33.3
Sabra15G0012200 Salix brachista HOM05D002599 ORTHO05D001895 2.6e-07 59.3 96 34.4
Potri.015G014850 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.4e-07 58.9 103 33.0
Manes.10G123900 Manihot esculenta HOM05D008353 ORTHO05D001895 4.4e-07 58.5 127 33.1
Ciclev10003284m.g Citrus clementina HOM05D022543 ORTHO05D001895 5.8e-07 58.2 110 30.0
Sabra15G0012100 Salix brachista HOM05D002599 ORTHO05D001895 5.8e-07 58.2 109 35.8
Sabra03G0009000 Salix brachista HOM05D002599 ORTHO05D001895 7.5e-07 57.8 120 35.8
Sabra03G0009300 Salix brachista HOM05D002599 ORTHO05D001895 7.5e-07 57.8 120 35.8
Sabra03G0009600 Salix brachista HOM05D002599 ORTHO05D001895 7.5e-07 57.8 120 35.8
Sabra03G0009900 Salix brachista HOM05D002599 ORTHO05D001895 7.5e-07 57.8 120 35.8
COL.COLO4_11746 Corchorus olitorius HOM05D008353 ORTHO05D001895 9.8e-07 57.4 116 29.3
COL.COLO4_17767 Corchorus olitorius HOM05D002599 ORTHO05D001895 9.8e-07 57.4 122 31.1
Gohir.A01G182500 Gossypium hirsutum HOM05D002599 ORTHO05D001895 9.8e-07 57.4 101 28.7
Potri.004G220100 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.3e-06 57.0 104 30.8
Thecc.02G023500 Theobroma cacao HOM05D002599 ORTHO05D001895 1.3e-06 57.0 98 38.8
Gorai.002G215500 Gossypium raimondii HOM05D002599 ORTHO05D001895 1.7e-06 56.6 101 29.7
Potri.012G013000 Populus trichocarpa HOM05D002599 ORTHO05D001895 1.7e-06 56.6 91 38.5
Thecc.02G092000 Theobroma cacao HOM05D008353 ORTHO05D001895 1.7e-06 56.6 126 33.3
Ciclev10024116m.g Citrus clementina HOM05D002599 ORTHO05D001895 2.9e-06 55.8 93 35.5
Potri.012G013167 Populus trichocarpa HOM05D002599 ORTHO05D001895 3.7e-06 55.5 109 32.1
Potri.015G015275 Populus trichocarpa HOM05D002599 ORTHO05D001895 8.3e-06 54.3 103 32.0


User provided reference genes

Program Settings