Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 5.5e-64 248.4 245 100.0
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 9.2e-35 151.4 205 76.6
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 6.6e-33 145.2 238 65.1
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.1e-32 144.4 237 75.1
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.9e-32 143.7 237 77.6
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.3e-32 142.5 237 63.7
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 1.2e-31 141.0 241 71.4
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.6e-31 140.6 206 80.1
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.8e-31 139.8 237 71.3
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.2e-30 135.6 237 73.8
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.5e-29 131.7 237 71.7
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 9.9e-29 131.3 205 74.6
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.9e-29 131.3 238 70.6
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.3e-28 131.0 237 73.4
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.7e-28 129.4 204 76.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 6.4e-28 128.6 238 72.3
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.3e-28 128.3 236 72.9
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.1e-27 127.9 237 73.8
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.9e-27 127.1 205 79.5
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 4.1e-27 125.9 240 72.5
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.4e-27 125.6 237 65.4
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-26 124.0 237 75.9
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.7e-26 123.2 204 67.6
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 4.6e-26 122.5 237 71.3
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.3e-25 120.9 225 67.6
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.7e-25 120.6 205 65.9
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 5.1e-25 119.0 206 68.4
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 2.5e-24 116.7 260 54.6
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.3e-24 115.2 206 57.3
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.2e-23 114.4 196 73.5
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.6e-23 114.0 237 69.6
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 1.6e-23 114.0 196 76.0
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 3.6e-23 112.8 206 71.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 8.1e-23 111.7 204 64.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 8.1e-23 111.7 232 65.9
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 1.4e-22 110.9 206 75.2
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 4.0e-22 109.4 206 71.8
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 4.0e-22 109.4 206 74.3
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 5.2e-22 109.0 204 77.0
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 6.8e-22 108.6 227 64.8
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 6.8e-22 108.6 237 73.8
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.0e-21 107.1 237 63.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 2.0e-21 107.1 205 68.8
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.6e-21 106.7 202 64.9
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 2.6e-21 106.7 206 73.8
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 4.4e-21 105.9 240 68.8
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 7.6e-21 105.1 224 59.8
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.7e-20 104.0 205 61.5
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 2.2e-20 103.6 235 59.1
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.8e-20 102.8 254 56.7
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 8.4e-20 101.7 237 62.4
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.4e-19 100.1 206 66.0
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 4.1e-19 99.4 160 66.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 5.4e-19 99.0 237 64.6
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 7.1e-19 98.6 202 62.4
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 9.2e-19 98.2 214 56.5
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.2e-18 97.8 206 73.8
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.1e-18 97.1 237 71.3
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.7e-18 96.7 237 64.1
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 4.6e-18 95.9 237 60.3
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 6.0e-18 95.5 246 67.5
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 1.0e-17 94.7 168 69.6
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.3e-17 94.4 148 64.2
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 3.0e-17 93.2 202 63.4
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 3.0e-17 93.2 185 69.7
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.9e-17 92.8 236 67.4
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 5.1e-17 92.4 205 72.7
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 5.1e-17 92.4 205 72.7
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 6.6e-17 92.0 159 79.2
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 8.7e-17 91.7 204 56.4
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 1.1e-16 91.3 183 68.9
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.5e-16 90.9 152 58.6
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.5e-16 90.9 160 68.8
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.5e-16 90.9 233 48.5
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.5e-16 90.9 195 69.2
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.9e-16 90.5 159 69.8
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.5e-16 90.1 205 73.2
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.5e-16 90.1 238 66.0
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 7.3e-16 88.6 119 58.8
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 7.3e-16 88.6 160 69.4
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 9.6e-16 88.2 116 53.4
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.2e-15 87.8 202 60.9
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.2e-15 87.8 206 46.6
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 2.8e-15 86.7 149 70.5
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 3.6e-15 86.3 206 68.9
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.1e-14 84.7 192 66.1
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 1.8e-14 84.0 237 64.6
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.8e-14 84.0 160 76.2
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.8e-14 84.0 217 62.2
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 2.4e-14 83.6 119 65.5
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 4.0e-14 82.8 240 57.5
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 4.0e-14 82.8 120 63.3
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 5.2e-14 82.4 214 58.4
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 6.9e-14 82.0 198 66.7
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 9.0e-14 81.6 194 58.2
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.2e-13 81.3 159 71.7
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.2e-13 81.3 208 51.0
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.5e-13 80.9 194 43.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.0e-13 80.5 160 75.0
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.6e-13 80.1 202 60.4
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.4e-13 79.7 196 70.9
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.8e-13 79.0 105 49.5
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 9.9e-13 78.2 222 51.4
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.3e-12 77.8 120 61.7
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 2.2e-12 77.0 153 52.9
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 2.9e-12 76.6 160 60.0
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 2.9e-12 76.6 160 60.0
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 8.4e-12 75.1 219 59.4
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.4e-11 73.6 106 56.6
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 2.4e-11 73.6 116 66.4
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 7.1e-11 72.0 157 56.7
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 7.1e-11 72.0 157 61.8
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 9.3e-11 71.6 183 37.2
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 9.3e-11 71.6 73 56.2
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 1.2e-10 71.2 150 58.0
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-10 70.9 157 59.9
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.6e-10 70.9 160 63.8
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.6e-10 70.9 132 74.2
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.6e-10 70.9 233 60.9
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.1e-10 70.5 192 54.7
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 4.6e-10 69.3 197 54.3
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.7e-09 67.4 186 62.4
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 2.3e-09 67.0 150 66.7
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 3.0e-09 66.6 195 50.3
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 5.1e-09 65.9 203 60.6
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 6.6e-09 65.5 242 58.3
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.7e-09 65.1 157 59.9
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.9e-08 63.9 69 55.1
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.9e-08 63.9 74 68.9
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 4.3e-08 62.8 269 45.7
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 4.3e-08 62.8 91 59.3
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 5.6e-08 62.4 149 57.7
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 7.3e-08 62.0 71 52.1
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.3e-07 61.2 149 49.0
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 1.3e-07 61.2 134 52.2
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.3e-07 61.2 143 46.9
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.3e-07 61.2 149 64.4
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.1e-07 60.5 132 65.9
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 2.1e-07 60.5 74 50.0
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 2.8e-07 60.1 151 49.7
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.8e-07 60.1 150 64.7
AT1G10890 Arabidopsis thaliana HOM05D003347 ORTHO05D003821 3.6e-07 59.7 247 55.1
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.6e-07 59.7 259 54.4
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 4.8e-07 59.3 196 47.4
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 4.8e-07 59.3 159 49.1
SEGI_27842 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 4.8e-07 59.3 165 66.7
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 6.2e-07 58.9 71 60.6
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 8.1e-07 58.5 261 55.6
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 1.8e-06 57.4 72 61.1
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.4e-06 57.0 70 47.1
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 2.4e-06 57.0 148 61.5
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 2.4e-06 57.0 186 52.7
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.1e-06 56.6 116 59.5
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 3.1e-06 56.6 70 52.9
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 6.9e-06 55.5 160 69.4
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 9.0e-06 55.1 111 45.9


User provided reference genes

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