Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.5e-69 266.2 148 100.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.5e-56 223.0 148 81.1
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 3.7e-55 218.4 148 78.4
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 79.1
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 8.2e-55 217.2 148 79.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.1e-54 216.9 148 79.7
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-54 214.9 148 78.4
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.2e-53 213.4 148 78.4
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-53 213.4 148 77.7
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-53 213.4 148 77.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.6e-53 213.0 148 77.0
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 77.0
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 77.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 77.0
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 7.7e-53 210.7 148 75.7
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 7.7e-53 210.7 148 76.4
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 76.4
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 5.0e-52 208.0 148 75.7
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 8.5e-52 207.2 147 75.5
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 76.4
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 4.2e-51 204.9 148 73.0
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 75.7
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 74.3
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 6.1e-50 201.1 148 72.3
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 72.3
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 72.3
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 1.4e-49 199.9 148 73.6
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 5.2e-49 198.0 148 72.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 5.2e-49 198.0 145 73.8
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.5e-48 196.4 144 73.6
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.0e-48 196.1 143 74.1
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.4e-48 194.9 143 74.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 9.8e-48 193.7 148 70.9
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.3e-47 193.4 148 68.9
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.3e-47 193.4 144 72.2
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 4.8e-47 191.4 143 72.7
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.4e-46 189.9 150 72.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.8e-46 189.5 148 68.9
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 2.7e-45 185.7 148 69.6
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 3.5e-45 185.3 148 72.3
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.5e-45 184.9 148 70.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 5.9e-45 184.5 150 68.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 7.7e-45 184.1 150 68.0
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 6.5e-44 181.0 148 68.9
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.1e-43 180.3 148 68.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.5e-43 179.1 152 65.8
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 3.3e-43 178.7 150 66.0
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.5e-43 177.2 148 67.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.2e-42 176.8 143 70.6
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.6e-42 176.4 148 65.5
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 2.1e-42 176.0 150 67.3
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.8e-42 175.6 151 68.9
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 6.1e-42 174.5 152 68.4
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.0e-42 174.1 140 66.4
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.4e-41 173.3 151 68.2
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 4.0e-41 171.8 151 67.5
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 5.2e-41 171.4 150 64.0
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.5e-40 169.9 144 65.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.8e-40 167.2 148 68.9
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.2e-39 166.0 155 64.5
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 3.7e-39 165.2 138 64.5
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-38 163.7 121 71.9
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.1e-38 163.7 143 67.1
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.1e-38 163.7 152 65.8
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 1.4e-38 163.3 148 64.2
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.4e-38 161.4 120 74.2
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 7.0e-38 161.0 149 61.1
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 9.2e-38 160.6 119 73.1
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.2e-37 160.2 119 73.9
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 1.2e-37 160.2 141 62.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 149 61.1
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.6e-37 159.8 149 61.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-37 159.5 119 73.1
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-37 159.5 119 73.1
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 4.5e-37 158.3 150 60.0
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.3e-36 156.8 132 67.4
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 3.8e-36 155.2 148 58.8
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.8e-36 155.2 148 62.2
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 58.1
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 4.3e-35 151.8 121 71.1
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-34 150.2 114 71.9
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-34 150.2 129 64.3
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.1e-34 149.4 123 69.1
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 6.1e-34 147.9 141 55.3
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 8.0e-34 147.5 114 71.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.0e-33 147.1 148 60.1
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.4e-33 146.7 118 67.8
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.3e-33 146.0 150 58.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.8e-33 144.4 138 60.9
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.1
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.1
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.1
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.1
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.1
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 56.1
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 8.9e-33 144.1 149 59.7
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 55.4
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-32 143.7 150 58.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.2e-32 143.7 148 56.8
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 2.6e-32 142.5 112 68.8
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 55.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 3.4e-32 142.1 148 55.4
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 56.1
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 4.4e-32 141.7 148 56.1
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 2.2e-31 139.4 148 55.4
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.9e-31 139.0 149 53.7
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 4.9e-31 138.3 151 55.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.1e-30 137.1 111 67.6
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 7.0e-30 134.4 150 54.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 7.0e-30 134.4 150 54.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.6e-29 133.3 149 57.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.3e-28 130.2 119 59.7
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.0e-28 129.0 151 55.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.5e-27 124.0 125 56.8
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.4e-25 120.2 150 53.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 8.3e-23 110.9 148 43.9
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.2e-22 109.0 79 70.9
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.3e-20 103.6 119 55.5
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.5e-19 100.1 108 58.3
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.7e-18 95.1 108 55.6
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.3e-17 92.8 75 66.7
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.9e-15 85.9 86 55.8
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.4e-14 82.8 62 72.6
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 3.2e-14 82.4 92 56.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 5.4e-14 81.6 72 63.9
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 9.2e-14 80.9 89 52.8
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.3e-12 77.0 59 66.1
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.5e-11 73.6 92 54.3
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-10 70.5 69 56.5
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.6e-10 68.9 132 45.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.6e-10 68.9 132 45.5
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 8.9e-09 64.3 90 50.0
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 2.2e-07 59.7 130 31.5
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.9e-07 59.3 69 56.5
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 8.4e-07 57.8 136 31.6


User provided reference genes

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