Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 2.8e-159 565.5 338 100.0
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 7.3e-99 364.8 296 68.9
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 6.8e-97 358.2 327 64.5
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 8.9e-97 357.8 322 66.1
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.4e-96 355.9 326 68.1
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 2.9e-95 352.8 343 62.4
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 2.9e-95 352.8 232 81.0
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-95 351.7 320 64.4
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 6.4e-95 351.7 321 67.3
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.4e-94 350.5 322 71.7
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 5.4e-94 348.6 231 79.2
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.2e-93 347.4 234 78.2
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.6e-93 347.1 316 65.5
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-93 347.1 287 66.9
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.1e-93 346.7 231 77.9
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 2.1e-93 346.7 232 79.3
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 4.6e-93 345.5 230 78.3
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 4.6e-93 345.5 232 78.4
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 4.6e-93 345.5 300 66.7
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.6e-93 345.5 311 66.6
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 6.0e-93 345.1 230 77.0
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.3e-92 343.2 269 72.1
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 3.0e-92 342.8 228 78.1
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.9e-92 342.4 232 78.0
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.9e-92 342.4 232 78.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.9e-92 342.4 232 78.0
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 5.1e-92 342.0 320 64.7
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.1e-91 340.9 231 74.9
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.5e-91 340.5 317 70.0
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.5e-91 340.5 232 76.3
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 2.5e-91 339.7 229 76.9
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 2.5e-91 339.7 267 74.9
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 2.5e-91 339.7 233 77.3
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 4.3e-91 339.0 231 77.5
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 4.3e-91 339.0 264 73.1
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 5.6e-91 338.6 317 63.1
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 9.6e-91 337.8 233 76.8
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.6e-90 337.0 230 74.8
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 2.1e-90 336.7 231 75.8
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 3.6e-90 335.9 233 76.4
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 4.7e-90 335.5 243 73.7
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 8.1e-90 334.7 230 77.4
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.4e-89 333.2 265 67.9
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 5.2e-89 332.0 231 75.3
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 6.9e-89 331.6 231 75.3
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.2e-88 330.9 230 73.9
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 1.2e-88 330.9 230 74.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.2e-88 330.9 233 73.8
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.2e-88 330.9 233 73.8
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 1.2e-88 330.9 231 74.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.5e-88 330.5 234 72.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.8e-88 328.6 230 74.3
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 9.9e-88 327.8 232 73.7
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 2.9e-87 326.2 231 73.2
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 4.9e-87 325.5 232 73.3
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 6.4e-87 325.1 262 65.6
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 6.4e-87 325.1 262 65.6
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 6.4e-87 325.1 231 72.3
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.1e-86 324.3 230 73.0
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.1e-86 324.3 230 73.5
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 1.9e-86 323.6 262 64.9
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 7.1e-86 321.6 229 72.5
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 9.3e-86 321.2 229 72.1
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.1e-85 320.1 262 63.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.1e-85 320.1 246 69.5
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 7.8e-85 318.2 236 73.7
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.3e-84 316.6 229 72.5
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 3.0e-84 316.2 230 70.9
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.9e-83 313.5 242 69.0
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.9e-83 313.5 237 71.3
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 2.5e-83 313.2 230 70.9
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 7.3e-83 311.6 231 71.4
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 7.3e-83 311.6 230 72.2
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 9.6e-83 311.2 448 47.8
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.6e-82 310.5 230 69.6
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 2.1e-82 310.1 241 69.7
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.6e-82 309.3 232 69.8
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 6.2e-82 308.5 230 69.6
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.4e-81 307.4 230 69.1
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.4e-81 307.4 236 68.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.1e-81 306.2 232 69.4
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 4.0e-81 305.8 230 69.6
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 6.9e-81 305.1 232 69.8
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.2e-80 304.3 232 68.5
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.5e-80 303.9 242 69.4
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.0e-80 303.5 232 69.4
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 2.0e-80 303.5 234 68.4
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 2.6e-80 303.1 235 68.5
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 9.9e-80 301.2 232 69.0
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 9.9e-80 301.2 232 68.5
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 9.9e-80 301.2 232 69.0
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.3e-79 300.8 174 84.5
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.9e-79 299.7 233 66.1
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 3.2e-78 296.2 230 67.4
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 5.4e-78 295.4 233 67.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 7.1e-78 295.0 256 64.5
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 5.6e-75 285.4 226 65.9
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 5.6e-75 285.4 233 68.7
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 5.6e-75 285.4 229 66.8
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 3.4e-72 276.2 237 63.7
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.3e-71 274.2 172 79.1
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 3.8e-71 272.7 174 78.2
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 6.4e-71 271.9 230 60.9
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.9e-70 270.4 234 66.2
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.9e-70 270.4 230 60.0
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.1e-67 261.2 309 50.2
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.1e-66 256.9 233 61.8
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.8e-66 256.5 230 63.0
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.1e-65 253.1 216 66.2
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 4.0e-65 252.7 175 70.9
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.7e-63 247.3 175 68.0
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 8.7e-60 235.0 233 55.8
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.9e-59 233.8 415 39.3
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.6e-58 230.7 167 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-51 207.6 177 58.2
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 4.8e-50 202.6 112 90.2
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 8.2e-50 201.8 111 89.2
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.2e-48 198.0 110 89.1
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 1.9e-46 190.7 169 58.0
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.1e-44 182.6 111 80.2
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.1e-38 164.9 229 44.5
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 9.4e-38 161.8 118 67.8
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 5.2e-36 156.0 93 81.7
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 8.8e-28 128.6 121 56.2
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 9.7e-27 125.2 157 43.9
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 3.1e-25 120.2 130 56.9
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 9.1e-25 118.6 119 58.8
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.0e-24 117.5 88 69.3
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.0e-23 115.2 136 43.4
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 2.2e-23 114.0 119 55.5
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-23 114.0 65 84.6
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-23 114.0 100 58.0
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-23 114.0 65 84.6
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 2.9e-23 113.6 120 56.7
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.1e-22 111.7 119 53.8
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-22 111.3 65 80.0
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-22 111.3 65 80.0
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.5e-22 111.3 65 80.0
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.7e-21 107.1 65 76.9
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.2e-19 101.7 143 43.4
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 5.7e-19 99.4 164 37.8
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.0e-12 78.6 49 81.6
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 4.9e-10 69.7 154 35.1
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.3e-07 61.6 152 28.9
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 1.1e-06 58.5 161 31.7
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 7.3e-06 55.8 78 47.4


User provided reference genes

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