Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.1e-227 793.1 467 100.0
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.6e-149 533.5 452 66.4
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.3e-141 507.3 459 64.1
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 5.5e-137 491.9 504 56.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.9e-135 485.7 454 61.5
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 6.9e-132 474.9 459 58.4
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.2e-130 469.9 474 61.2
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.6e-128 463.8 455 55.8
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 6.1e-128 461.8 450 57.8
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.4e-127 460.7 455 57.8
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.3e-126 455.7 456 55.5
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 7.4e-126 454.9 457 54.9
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 7.4e-126 454.9 456 54.6
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.0e-123 446.8 462 58.4
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 8.5e-122 441.4 459 55.6
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.4e-121 440.7 421 56.8
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.5e-121 438.7 428 57.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.1e-119 432.2 428 56.5
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.6e-118 429.9 461 56.0
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.3e-118 429.5 457 56.9
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.7e-118 428.7 457 53.0
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.2e-117 426.8 455 54.9
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.8e-117 426.4 458 57.4
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.8e-117 425.6 470 51.7
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.8e-116 423.7 457 52.5
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.8e-116 423.7 456 55.3
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 4.1e-116 422.5 469 52.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.2e-115 421.0 459 54.5
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.5e-115 419.1 457 51.6
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.8e-114 416.0 455 52.3
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.9e-113 413.7 465 51.4
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 7.2e-113 411.8 457 50.8
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.2e-113 411.8 459 53.8
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.1e-112 408.7 473 49.9
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.3e-111 406.8 473 49.5
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.0e-111 406.0 461 54.2
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.8e-111 404.8 457 56.2
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 7.4e-110 401.7 457 55.8
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.3e-109 401.0 472 51.1
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-109 401.0 461 52.9
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.8e-109 399.8 455 49.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 3.7e-109 399.4 456 50.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.3e-108 395.6 469 48.4
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.6e-107 394.0 461 52.1
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.6e-107 394.0 458 57.9
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.0e-106 389.0 463 51.6
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.2e-105 386.3 467 47.3
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 7.2e-105 385.2 460 55.9
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 9.4e-105 384.8 460 48.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 9.4e-105 384.8 435 48.5
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.0e-103 379.4 470 48.7
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 9.8e-102 374.8 481 49.3
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.7e-101 374.0 459 49.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.2e-101 373.6 459 50.1
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.2e-101 373.6 459 49.7
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.3e-101 371.7 470 48.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 8.3e-101 371.7 459 46.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.1e-100 371.3 467 46.9
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.4e-100 370.9 471 49.3
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.8e-100 370.5 468 54.5
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.4e-100 370.2 465 47.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.1e-100 369.8 459 49.7
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.7e-99 365.2 432 47.2
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.3e-98 364.4 461 44.7
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-98 364.4 459 44.7
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.3e-98 364.4 454 45.8
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.3e-98 364.4 443 45.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.7e-98 364.0 461 44.7
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.9e-98 363.2 468 45.5
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 3.8e-98 362.8 461 44.7
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.1e-97 361.3 459 44.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.5e-97 360.9 468 45.3
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.5e-97 360.9 465 51.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 3.2e-97 359.8 467 45.8
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.6e-96 357.5 456 44.1
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.6e-96 356.3 454 44.9
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.6e-96 356.3 454 44.9
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 4.7e-96 355.9 435 46.9
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.1e-96 355.5 458 52.2
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 8.8e-95 351.7 467 42.4
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.0e-94 350.5 483 47.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.6e-94 350.1 459 45.8
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.4e-94 349.7 471 44.6
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 4.4e-94 349.4 463 48.8
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 9.8e-94 348.2 432 44.9
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.2e-93 347.1 482 46.5
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 8.3e-93 345.1 402 47.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.4e-92 344.4 474 44.7
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.8e-92 344.0 418 49.0
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 2.4e-92 343.6 463 44.9
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.1e-92 343.2 456 46.9
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 7.0e-92 342.0 454 52.2
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 9.1e-92 341.7 461 48.8
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.7e-91 340.1 477 51.4
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.3e-90 337.0 380 52.1
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.3e-90 337.0 444 46.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.9e-90 336.7 477 50.9
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 6.6e-90 335.5 444 46.6
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.1e-89 334.7 481 46.6
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.1e-89 334.7 456 44.3
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.5e-89 333.6 482 47.9
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.3e-89 333.2 477 50.5
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.6e-88 330.9 462 48.1
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.3e-87 327.0 454 43.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.3e-87 327.0 451 46.8
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.0e-87 326.2 471 44.6
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-86 324.7 451 47.5
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 4.4e-86 322.8 387 55.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 5.7e-86 322.4 461 41.4
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.3e-85 321.2 462 45.9
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 6.4e-85 318.9 461 46.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-84 318.2 460 42.0
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.1e-84 318.2 457 40.5
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-82 311.2 477 41.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 6.6e-82 308.9 475 41.3
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.5e-81 307.0 462 41.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.0e-79 301.6 457 46.2
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-78 297.7 484 40.1
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-76 291.6 465 42.2
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.1e-72 277.3 273 54.6
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-70 271.6 456 38.4
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-70 271.2 453 37.7
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.7e-64 249.6 247 58.3
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.2e-64 249.2 414 41.3
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.8e-63 247.7 395 35.9
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.4e-55 221.5 247 53.0
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.2e-55 219.5 446 39.5
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 4.4e-54 216.5 155 71.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 8.4e-53 212.2 459 35.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.4e-52 211.5 140 74.3
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.4e-44 184.9 149 62.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.2e-44 183.7 180 55.0
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-43 181.4 245 46.1
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.1e-43 181.0 400 37.5
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.3e-41 173.3 340 32.4
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.8e-31 141.4 460 25.4
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.6e-30 137.5 135 48.9
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.1e-28 132.1 142 47.9
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.2e-28 130.6 211 42.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 3.5e-27 127.1 444 25.2
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.0e-26 124.0 135 45.9
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 5.1e-26 123.2 404 26.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.3e-25 120.2 132 46.2
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 7.4e-25 119.4 464 24.1
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.4e-23 115.2 103 60.2
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.4e-23 114.4 447 27.7
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 5.3e-23 113.2 188 37.2
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.3e-23 113.2 129 46.5
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 2.0e-22 111.3 444 25.0
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.5e-20 103.2 123 44.7
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-18 99.0 164 37.8
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-18 98.6 173 36.4
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.5e-17 94.4 408 22.8
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.5e-17 94.4 94 55.3
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.5e-17 94.4 107 51.4
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.3e-17 94.0 136 35.3
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 7.4e-17 92.8 73 64.4
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.3e-16 92.0 123 37.4
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 3.1e-15 87.4 174 29.9
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.2e-12 76.3 65 61.5
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.2e-12 76.3 65 61.5
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.7e-11 74.3 365 21.4
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 3.9e-10 70.5 67 52.2
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.5e-09 68.6 84 35.7
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-08 65.1 113 43.4
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.1e-07 62.4 84 45.2
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.6e-06 57.8 48 58.3


User provided reference genes

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