Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.4e-32 142.5 81 100.0
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 4.3e-13 77.8 87 49.4
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 7.3e-13 77.0 91 47.3
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 3.6e-12 74.7 86 61.6
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.6e-12 74.7 84 51.2
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 3.6e-12 74.7 86 65.1
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 6.2e-12 73.9 83 49.4
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-11 73.2 84 50.0
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.8e-11 72.4 92 43.5
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.3e-11 72.0 84 60.7
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.1e-11 71.6 84 50.0
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.0e-11 71.2 92 43.5
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 6.8e-11 70.5 94 40.4
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 8.9e-11 70.1 86 46.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.2e-10 69.7 92 42.4
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.6e-10 68.6 85 43.5
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.6e-10 68.6 84 54.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.6e-10 68.6 86 45.3
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.4e-10 68.2 84 57.1
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 4.4e-10 67.8 80 60.0
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 5.8e-10 67.4 92 46.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.8e-10 67.4 81 59.3
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.8e-10 67.4 86 43.0
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 7.5e-10 67.0 84 57.1
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.3e-09 66.2 78 44.9
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.3e-09 66.2 92 41.3
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.7e-09 65.9 68 54.4
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.7e-09 65.9 84 54.8
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.2e-09 65.5 47 63.8
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 2.2e-09 65.5 85 60.0
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 2.9e-09 65.1 94 44.7
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.9e-09 65.1 30 93.3
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.7e-09 64.7 30 90.0
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 3.7e-09 64.7 81 45.7
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 3.7e-09 64.7 84 46.4
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 4.9e-09 64.3 92 40.2
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.9e-09 64.3 30 90.0
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.9e-09 64.3 92 52.2
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.4e-09 63.9 30 86.7
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 6.4e-09 63.9 30 90.0
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.4e-09 63.9 80 43.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.4e-09 63.9 30 86.7
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.4e-09 63.9 30 90.0
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.4e-09 63.9 30 86.7
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 6.4e-09 63.9 30 86.7
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.4e-09 63.9 84 57.1
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 8.3e-09 63.5 48 58.3
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 8.3e-09 63.5 96 55.2
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 8.3e-09 63.5 92 41.3
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 8.3e-09 63.5 30 86.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.3e-09 63.5 30 83.3
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.3e-09 63.5 80 43.8
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.3e-09 63.5 30 83.3
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 8.3e-09 63.5 30 86.7
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 8.3e-09 63.5 30 86.7
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-08 63.2 92 41.3
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.1e-08 63.2 92 41.3
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.1e-08 63.2 30 86.7
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 80 43.8
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 30 80.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.1e-08 63.2 92 48.9
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 1.4e-08 62.8 94 54.3
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.4e-08 62.8 96 54.2
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.4e-08 62.8 91 44.0
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.4e-08 62.8 96 38.5
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.4e-08 62.8 30 90.0
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 86.7
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 91 48.4
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 1.9e-08 62.4 86 58.1
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 81 43.2
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 86.7
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 83.3
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.9e-08 62.4 92 43.5
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.9e-08 62.4 80 55.0
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 83.3
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 60 46.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.9e-08 62.4 30 83.3
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.4e-08 62.0 83 44.6
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 83.3
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 83.3
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 83.3
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-08 62.0 30 83.3
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.4e-08 62.0 90 43.3
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.2e-08 61.6 81 46.9
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 3.2e-08 61.6 30 83.3
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 83.3
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 4.1e-08 61.2 90 52.2
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 83.3
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 83.3
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.1e-08 61.2 30 80.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 4.1e-08 61.2 29 86.2
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 5.4e-08 60.8 84 39.3
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 83.3
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 83.3
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 83.3
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 83.3
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 80.0
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 80.0
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 5.4e-08 60.8 30 80.0
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.4e-08 60.8 29 86.2
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 7.1e-08 60.5 86 53.5
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 9.2e-08 60.1 89 37.1
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 9.2e-08 60.1 83 50.6
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 86.7
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 83.3
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.2e-07 59.7 82 41.5
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 76.7
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 80.0
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.6e-07 59.3 30 83.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.6e-07 59.3 91 41.8
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 76.7
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.1e-07 58.9 91 40.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.1e-07 58.9 30 76.7
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 76.7
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 2.7e-07 58.5 77 51.9
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.5e-07 58.2 88 44.3
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 73.3
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 76.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 80.0
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 4.6e-07 57.8 30 76.7
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.0e-07 57.4 28 78.6
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 6.0e-07 57.4 84 44.0
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 6.0e-07 57.4 30 73.3
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 7.8e-07 57.0 30 76.7
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.8e-07 57.0 30 76.7
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.8e-07 57.0 30 76.7
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 7.8e-07 57.0 80 45.0
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.0e-06 56.6 85 42.4
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 1.3e-06 56.2 86 52.3
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 76.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-06 56.2 89 41.6
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.3e-06 56.2 46 50.0
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 73.3
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 73.3
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.7e-06 55.8 28 78.6
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 2.3e-06 55.5 88 40.9
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.3e-06 55.5 26 88.5
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 2.3e-06 55.5 87 42.5
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.3e-06 55.5 30 70.0
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.0e-06 55.1 30 73.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 3.0e-06 55.1 30 70.0
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.9e-06 54.7 30 73.3
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 6.6e-06 53.9 81 45.7
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 8.6e-06 53.5 30 76.7


User provided reference genes

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