Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.7e-31 138.7 69 100.0
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.3e-26 122.5 69 88.4
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.4e-25 118.2 69 85.5
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.4e-25 118.2 69 85.5
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.5e-24 114.4 69 81.2
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 3.5e-24 114.4 69 81.2
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 3.5e-24 114.4 66 81.8
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 4.6e-24 114.0 69 79.7
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.0e-24 113.6 67 83.6
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.0e-23 112.8 66 84.8
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.7e-23 112.1 69 79.7
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.1e-23 110.5 67 79.1
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 2.5e-22 108.2 66 74.2
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 4.3e-22 107.5 66 78.8
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 4.3e-22 107.5 67 77.6
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 4.3e-22 107.5 66 75.8
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 9.6e-22 106.3 64 79.7
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 9.6e-22 106.3 66 77.3
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.2e-21 105.9 66 77.3
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 1.2e-21 105.9 66 74.2
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.6e-21 105.5 64 78.1
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.8e-21 104.8 64 76.6
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.7e-21 104.0 64 81.2
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 4.7e-21 104.0 63 79.4
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 8.1e-21 103.2 64 76.6
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.1e-20 102.8 64 76.6
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 1.1e-20 102.8 64 78.1
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 1.8e-20 102.1 64 76.6
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.4e-20 101.7 68 72.1
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.1e-20 101.3 68 72.1
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.1e-20 101.3 68 72.1
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 6.9e-20 100.1 64 75.0
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 8.9e-20 99.8 64 75.0
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.0e-19 98.6 66 75.8
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.0e-19 98.6 66 75.8
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 2.6e-19 98.2 64 71.9
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 2.6e-19 98.2 64 71.9
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 4.4e-19 97.4 66 74.2
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 7.6e-19 96.7 64 71.9
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 7.6e-19 96.7 64 71.9
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 9.9e-19 96.3 63 74.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 2.2e-18 95.1 64 68.8
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.2e-18 95.1 64 71.9
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 8.4e-18 93.2 64 70.3
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 2.4e-17 91.7 64 71.9
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 7.1e-17 90.1 63 69.8
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.2e-16 89.4 67 70.1
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.6e-16 89.0 62 69.4
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.6e-16 89.0 62 69.4
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.6e-16 89.0 62 69.4
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-16 89.0 64 67.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.6e-16 89.0 62 69.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 2.1e-16 88.6 66 65.2
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 4.6e-16 87.4 66 63.6
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.6e-16 87.4 66 62.1
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 7.8e-16 86.7 59 71.2
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 7.8e-16 86.7 59 69.5
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.0e-15 86.3 66 63.6
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.0e-15 86.3 66 63.6
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.0e-15 86.3 57 73.7
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.3e-15 85.9 62 66.1
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.7e-15 85.5 62 66.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.3e-15 85.1 62 67.7
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 2.3e-15 85.1 66 62.1
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 3.0e-15 84.7 59 67.8
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.0e-15 84.7 62 66.1
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.0e-15 84.7 59 69.5
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 3.9e-15 84.3 66 62.1
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 5.1e-15 84.0 58 75.9
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 6.6e-15 83.6 56 73.2
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 6.6e-15 83.6 56 73.2
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 6.6e-15 83.6 49 83.7
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 1.1e-14 82.8 66 63.6
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 63 61.9
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.5e-14 82.4 62 66.1
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.5e-14 82.4 62 66.1
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 67 61.2
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.9e-14 82.0 59 69.5
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 56 71.4
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.9e-14 82.0 56 71.4
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 2.5e-14 81.6 56 67.9
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 2.5e-14 81.6 66 62.1
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.5e-14 81.6 62 66.1
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.5e-14 81.6 60 66.7
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.3e-14 81.3 62 64.5
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 3.3e-14 81.3 66 62.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 4.3e-14 80.9 62 61.3
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 62.1
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 62.1
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 63.6
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 4.3e-14 80.9 66 60.6
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 5.6e-14 80.5 56 66.1
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 5.6e-14 80.5 56 66.1
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 5.6e-14 80.5 62 66.1
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.6e-14 80.5 58 70.7
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 5.6e-14 80.5 58 70.7
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 7.3e-14 80.1 56 71.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 7.3e-14 80.1 62 62.9
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 7.3e-14 80.1 53 69.8
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.3e-14 80.1 59 67.8
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 7.3e-14 80.1 56 71.4
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.6e-14 79.7 62 62.9
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.6e-14 79.7 62 62.9
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 9.6e-14 79.7 61 63.9
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 9.6e-14 79.7 62 62.9
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.3e-13 79.3 62 66.1
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.6e-13 79.0 61 65.6
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.6e-13 79.0 62 64.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 2.1e-13 78.6 58 62.1
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.8e-13 78.2 59 64.4
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.6e-13 77.8 55 67.3
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.2e-13 77.0 64 59.4
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 6.2e-13 77.0 62 64.5
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 8.1e-13 76.6 56 67.9
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 8.1e-13 76.6 58 65.5
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-12 76.3 62 61.3
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.1e-12 76.3 62 61.3
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.1e-12 76.3 59 64.4
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.1e-12 76.3 59 64.4
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.4e-12 75.9 66 57.6
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-12 75.9 64 59.4
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-12 75.5 59 61.0
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 1.8e-12 75.5 59 62.7
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 1.8e-12 75.5 59 62.7
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.8e-12 75.5 64 56.2
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.8e-12 75.5 64 56.2
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.1e-12 74.7 62 58.1
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 5.3e-12 73.9 59 61.0
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 5.3e-12 73.9 59 61.0
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 5.3e-12 73.9 59 61.0
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.5e-11 72.4 51 68.6
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.6e-11 71.6 62 61.3
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 5.8e-11 70.5 62 58.1
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 9.9e-11 69.7 39 87.2
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.2e-10 68.6 58 62.1
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 2.9e-10 68.2 49 65.3
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 3.8e-10 67.8 62 56.5
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.8e-10 67.8 62 58.1
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.4e-10 67.0 61 55.7
TPR.G15223 Trifolium pratense HOM05D004166 ORTHO05D004992 1.1e-09 66.2 66 54.5
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 1.4e-09 65.9 62 54.8
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.2e-09 64.3 58 56.9
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 4.2e-09 64.3 62 54.8
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 5.4e-09 63.9 58 55.2
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.1e-09 63.5 58 56.9
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 9.3e-09 63.2 56 57.1
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 9.3e-09 63.2 56 57.1
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.3e-09 63.2 55 60.0
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 9.3e-09 63.2 58 53.4
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 2.1e-08 62.0 74 45.9
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.7e-08 61.6 55 56.4
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 4.6e-08 60.8 66 53.0
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 6.0e-08 60.5 66 53.0
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 7.9e-08 60.1 61 55.7
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 7.9e-08 60.1 49 59.2
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 7.9e-08 60.1 62 48.4
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 1.0e-07 59.7 66 53.0
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.3e-07 59.3 62 46.8
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 1.3e-07 59.3 58 55.2
BcaNung06092 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-07 58.9 59 54.2
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 3.0e-07 58.2 62 48.4
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 3.9e-07 57.8 55 50.9
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 3.9e-07 57.8 58 55.2
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 5.1e-07 57.4 58 56.9
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 5.1e-07 57.4 58 53.4
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 8.7e-07 56.6 58 55.2
Solyc10g080270.1 Solanum lycopersicum HOM05D004166 ORTHO05D390163 3.3e-06 54.7 61 45.9


User provided reference genes

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