Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 4.6e-159 564.7 326 100.0
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.3e-116 421.4 319 71.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.3e-96 355.5 326 62.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.7e-95 352.1 320 60.9
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-92 343.6 320 59.7
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.4e-86 323.9 319 68.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.0e-86 322.4 320 56.6
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 7.1e-83 311.6 337 52.8
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.8e-82 308.1 321 57.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 3.3e-80 302.8 322 55.9
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 4.3e-80 302.4 326 55.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.3e-80 301.6 345 57.4
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.8e-79 299.7 349 57.3
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-79 299.7 349 57.3
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.1e-78 296.2 328 54.0
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 9.0e-78 294.7 318 55.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-77 293.5 348 56.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.8e-77 292.0 326 54.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.2e-76 290.0 319 53.6
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.2e-75 286.2 346 55.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.2e-75 285.8 348 54.9
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 6.0e-74 282.0 350 52.0
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.3e-73 280.0 349 53.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 4.3e-72 275.8 354 48.6
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 7.3e-72 275.0 331 49.2
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 7.3e-72 275.0 331 49.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 7.3e-72 275.0 318 51.9
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-71 273.9 319 52.0
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.6e-71 272.7 352 49.7
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 6.2e-71 271.9 353 49.3
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.9e-70 268.5 333 48.0
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-68 263.8 326 50.9
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.7e-68 263.8 321 51.1
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 6.4e-68 261.9 324 49.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 6.4e-68 261.9 340 47.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.1e-67 261.2 342 48.5
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.9e-67 260.4 340 50.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 5.4e-67 258.8 340 50.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 6.0e-66 255.4 324 50.0
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 3.0e-65 253.1 324 50.3
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.0e-65 253.1 326 49.4
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.1e-64 251.1 335 46.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.1e-64 251.1 343 47.5
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.5e-64 250.8 345 55.1
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 2.5e-64 250.0 333 47.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 3.3e-64 249.6 323 47.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.6e-64 248.8 325 48.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.6e-63 247.3 320 50.6
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.8e-63 246.5 324 47.5
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.7e-63 246.1 323 46.4
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.8e-62 243.8 328 49.1
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.4e-62 243.4 327 48.6
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.3e-62 242.3 322 47.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.3e-62 242.3 323 46.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 9.0e-62 241.5 324 48.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 9.0e-62 241.5 334 49.7
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-61 241.1 324 46.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-61 241.1 324 46.6
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.6e-61 240.0 331 47.7
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.6e-61 240.0 348 45.7
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 3.4e-61 239.6 325 46.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 9.9e-61 238.0 335 46.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.1e-59 234.6 334 45.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 3.2e-59 233.0 327 44.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.2e-59 233.0 332 44.9
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.2e-59 233.0 322 47.5
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.2e-59 232.6 318 46.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.1e-58 230.3 325 48.6
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.1e-58 230.3 349 43.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.0e-58 228.8 326 46.3
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 3.0e-57 226.5 324 48.5
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 3.9e-57 226.1 327 47.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 5.1e-57 225.7 335 42.4
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 6.7e-57 225.3 332 45.2
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.5e-56 223.4 330 44.2
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.5e-56 223.4 330 44.2
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 7.4e-56 221.9 328 46.6
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 9.6e-56 221.5 322 46.3
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.8e-55 219.9 328 44.8
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 4.8e-55 219.2 368 42.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.8e-55 219.2 331 45.6
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 6.2e-55 218.8 326 46.3
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.4e-54 216.9 351 43.0
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.4e-54 216.9 333 43.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 2.0e-53 213.8 238 53.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 7.6e-53 211.8 360 40.6
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.0e-52 211.5 345 43.2
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.0e-52 211.5 351 43.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.9e-52 209.1 353 41.6
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.1e-51 208.0 320 46.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.9e-51 207.2 311 44.4
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.2e-51 206.5 315 42.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.2e-51 206.1 345 42.3
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.2e-51 206.1 345 42.3
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 5.5e-51 205.7 351 40.5
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.1e-51 205.3 213 53.1
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.2e-50 204.5 315 42.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.2e-50 204.5 327 44.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.8e-49 200.7 345 42.3
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 3.9e-49 199.5 326 41.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 8.7e-49 198.4 355 41.4
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.1e-48 198.0 366 39.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.9e-48 197.2 366 39.9
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.3e-48 196.4 350 40.3
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 5.7e-48 195.7 284 45.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 9.7e-48 194.9 329 40.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.4e-46 190.3 359 40.7
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.0e-44 184.9 355 41.1
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.3e-44 184.5 344 38.7
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.3e-44 184.5 344 38.7
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.5e-40 170.2 352 36.9
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.3e-39 167.9 228 46.9
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-39 167.5 222 46.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 4.5e-37 159.5 338 39.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 5.9e-37 159.1 214 46.7
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 7.7e-37 158.7 351 39.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.0e-36 158.3 239 43.1
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-36 157.9 351 39.0
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 3.8e-36 156.4 227 43.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.1e-35 154.8 237 42.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.4e-35 154.5 217 44.7
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.5e-35 153.7 228 42.5
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.5e-35 153.7 214 41.6
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 9.4e-35 151.8 242 41.3
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.6e-34 149.8 237 42.2
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 6.1e-34 149.1 348 32.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.0e-33 148.3 191 46.6
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.8e-33 147.5 235 42.6
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.3e-33 147.1 232 41.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 3.0e-33 146.7 194 46.9
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.9e-33 146.4 206 47.6
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.4e-32 142.9 216 38.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.7e-31 141.0 217 43.3
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.7e-31 141.0 237 42.6
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.8e-31 140.2 208 43.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.4e-30 137.9 231 39.0
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.1e-30 136.7 211 41.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 4.1e-30 136.3 240 41.2
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.0e-30 135.6 237 38.4
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-29 134.8 232 40.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.2e-29 134.8 205 41.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.2e-29 134.8 321 33.0
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.0e-28 131.7 207 41.1
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.3e-28 131.3 251 37.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 1.3e-28 131.3 236 38.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-28 130.6 244 36.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 2.9e-28 130.2 246 41.9
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.0e-28 129.4 213 41.8
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 4.2e-27 126.3 252 34.5
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 7.2e-27 125.6 217 40.1
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.8e-25 120.9 233 37.3
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.8e-23 112.8 253 32.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.1e-22 111.7 258 34.1
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.6e-21 107.1 204 37.3
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.5e-21 106.7 285 34.0
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.1e-18 97.4 89 50.6
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.1e-14 83.6 179 38.0
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.6e-13 81.3 57 57.9
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 3.5e-13 80.1 83 55.4
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.9e-13 79.3 57 57.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 5.9e-13 79.3 57 57.9
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-12 77.8 143 35.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-11 74.7 113 38.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 5.5e-11 72.8 48 64.6
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 9.4e-11 72.0 51 64.7
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.0e-08 64.3 57 59.6
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-07 60.5 141 35.5
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.1e-06 58.5 54 59.3
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 4.1e-06 56.6 119 33.6


User provided reference genes

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