Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G005100 Manihot esculenta HOM05D008019 ORTHO05D010184 1.5e-85 319.3 146 100.0
Potri.001G268000 Populus trichocarpa HOM05D008019 ORTHO05D010184 6.9e-70 267.3 146 83.6
Potri.009G062400 Populus trichocarpa HOM05D008019 ORTHO05D010184 3.8e-68 261.5 146 82.2
TAR623G0854 Trochodendron aralioides HOM05D008019 ORTHO05D010184 5.1e-65 251.1 146 79.5
QL04p007219 Quercus lobata HOM05D008019 ORTHO05D010184 7.3e-64 247.3 149 77.9
Nn2g15438 Nelumbo nucifera HOM05D008019 ORTHO05D010184 1.6e-63 246.1 146 75.3
TAR623G1004 Trochodendron aralioides HOM05D008019 ORTHO05D010184 3.6e-63 245.0 146 77.4
Cfa010760 Carpinus fangiana HOM05D008019 ORTHO05D010184 2.4e-62 242.3 146 78.8
Haze_03214 Corylus avellana HOM05D008019 ORTHO05D010184 4.0e-62 241.5 145 78.6
Dinv43452 Davidia involucrata HOM05D008019 ORTHO05D010184 1.2e-61 240.0 140 79.3
TWI09G1168 Tripterygium wilfordii HOM05D008019 ORTHO05D010184 7.6e-61 237.3 131 81.7
Thecc.01G411900 Theobroma cacao HOM05D008019 ORTHO05D010184 4.9e-60 234.6 148 73.0
Cc02_g27810 Coffea canephora HOM05D008019 ORTHO05D010184 2.4e-59 232.3 150 70.0
Ciclev10033035m.g Citrus clementina HOM05D008019 ORTHO05D010184 5.4e-59 231.1 146 74.0
CSS0044570 Camellia sinensis var. sinensis HOM05D008019 ORTHO05D010184 9.3e-59 230.3 148 73.0
Oeu010780.1 Olea europaea HOM05D008019 ORTHO05D010184 1.2e-58 229.9 143 73.4
Duzib138G0215 Durio zibethinus HOM05D008019 ORTHO05D010184 6.0e-58 227.6 151 71.5
PGR044G0644 Punica granatum HOM05D008019 ORTHO05D010184 6.0e-58 227.6 148 69.6
GSVIVG01032075001 Vitis vinifera HOM05D008019 ORTHO05D010184 6.0e-58 227.6 105 91.4
MD02G1313500 Malus domestica HOM05D008019 ORTHO05D010184 1.0e-57 226.9 146 71.2
Rhsim07G0054900 Rhododendron simsii HOM05D008019 ORTHO05D010184 1.0e-57 226.9 147 72.1
Glyma.12G238000 Glycine max HOM05D008019 ORTHO05D010184 6.7e-57 224.2 118 82.2
MBI04_g13624_MAGBIO Magnolia biondii HOM05D008019 ORTHO05D010184 6.7e-57 224.2 146 71.9
Prupe.2G012100 Prunus persica HOM05D008019 ORTHO05D010184 8.7e-57 223.8 146 71.2
Gohir.A12G094001 Gossypium hirsutum HOM05D008019 ORTHO05D010184 7.4e-56 220.7 153 68.6
Eucgr.J01265 Eucalyptus grandis HOM05D008019 ORTHO05D010184 1.3e-55 219.9 124 78.2
FvH4_7g00910 Fragaria vesca HOM05D008019 ORTHO05D010184 2.1e-55 219.2 149 71.1
Phvul.011G212700 Phaseolus vulgaris HOM05D008019 ORTHO05D010184 2.1e-55 219.2 136 74.3
CAN.G1155.15 Capsicum annuum HOM05D008019 ORTHO05D010184 3.7e-55 218.4 140 71.4
Actinidia31058 Actinidia chinensis HOM05D008019 ORTHO05D010184 4.8e-55 218.0 118 79.7
VMungo1127G0775 Vigna mungo HOM05D008019 ORTHO05D010184 4.8e-55 218.0 141 70.2
arahy.Tifrunner.gnm1.ann1.SF3C2I Arachis hypogaea HOM05D008019 ORTHO05D010184 6.2e-55 217.6 109 84.4
arahy.Tifrunner.gnm1.ann1.V37GBM Arachis hypogaea HOM05D008019 ORTHO05D010184 6.2e-55 217.6 109 84.4
FAN06G1027 Fragaria x ananassa HOM05D008019 ORTHO05D010184 8.1e-55 217.2 149 70.5
RcHm_v2.0_Chr1g0315801 Rosa chinensis HOM05D008019 ORTHO05D010184 8.1e-55 217.2 148 68.2
FAN01G0739 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.1e-54 216.9 149 69.8
Lj9A631G50 Lonicera japonica HOM05D008019 ORTHO05D010184 1.1e-54 216.9 151 67.5
MSTRG.17046 Avicennia marina HOM05D008019 ORTHO05D010184 1.4e-54 216.5 141 67.4
COL.COLO4_23925 Corchorus olitorius HOM05D008019 ORTHO05D010184 5.3e-54 214.5 149 67.1
Lj3g0025736 Lotus japonicus HOM05D008019 ORTHO05D010184 5.3e-54 214.5 142 66.9
TPR.G1886 Trifolium pratense HOM05D008019 ORTHO05D010184 5.3e-54 214.5 124 73.4
MELO3C023543.2 Cucumis melo HOM05D008019 ORTHO05D010184 6.9e-54 214.2 147 66.7
ECA248G1827 Erigeron canadensis HOM05D008019 ORTHO05D010184 9.0e-54 213.8 112 82.1
HanXRQChr01g0016161 Helianthus annuus HOM05D008019 ORTHO05D010184 2.6e-53 212.2 105 84.8
Gorai.008G105200 Gossypium raimondii HOM05D008019 ORTHO05D010184 4.5e-53 211.5 160 64.4
CDE05G1162 Ceratophyllum demersum HOM05D008019 ORTHO05D010184 5.8e-53 211.1 108 81.5
CsaV3_7G031160 Cucumis sativus L. HOM05D008019 ORTHO05D010184 9.9e-53 210.3 147 65.3
SGA_v2.0_scaffold167G38441 Striga asiatica HOM05D008019 ORTHO05D010184 1.3e-52 209.9 140 67.9
ClCG09G004230 Citrullus lanatus HOM05D008019 ORTHO05D010184 2.9e-52 208.8 146 65.1
CANSAT80G0909 Cannabis sativa HOM05D008019 ORTHO05D010184 1.4e-51 206.5 134 69.4
Aqoxy7G00800 Aquilegia oxysepala HOM05D008019 ORTHO05D010184 3.2e-51 205.3 128 69.5
FAN10G3815 Fragaria x ananassa HOM05D008019 ORTHO05D010184 3.2e-51 205.3 147 68.0
vmacro13657 Vaccinium macrocarpon HOM05D008019 ORTHO05D010184 3.2e-51 205.3 195 54.4
THA.LOC104819690 Tarenaya hassleriana HOM05D008019 ORTHO05D010184 5.5e-51 204.5 121 70.2
SalBow5G2002 Salvia bowleyana HOM05D008019 ORTHO05D010184 9.3e-51 203.8 105 81.9
Sabra09G0046100 Salix brachista HOM05D000752 ORTHO05D000572 6.0e-50 201.1 91 92.3
unitig_750.g28450 Utricularia gibba HOM05D008019 ORTHO05D010184 6.0e-50 201.1 122 72.1
Lsat_1_v5_gn_1_107820 Lactuca sativa HOM05D008019 ORTHO05D010184 1.0e-49 200.3 105 81.9
Os09g0485800 Oryza sativa ssp. japonica HOM05D008019 ORTHO05D010184 3.0e-49 198.7 105 79.0
SEGI_23902 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 3.1e-46 188.7 104 75.0
Migut.B01317 Erythranthe guttata HOM05D008019 ORTHO05D010184 2.5e-43 179.1 88 86.4
Sed0006336 Sechium edule HOM05D008019 ORTHO05D010184 1.6e-42 176.4 104 73.1
FAN03G3138 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.8e-41 172.9 100 72.0
Pp3c14_7420 Physcomitrium patens HOM05D008019 ORTHO05D010184 2.3e-41 172.6 104 68.3
Lalb_Chr19g0132131 Lupinus albus HOM05D008019 ORTHO05D010184 1.6e-39 166.4 77 90.9
Hund19732 Selenicereus undatus HOM05D008019 ORTHO05D010184 2.2e-39 166.0 76 90.8
ATR0605G214 Amborella trichopoda HOM05D008019 ORTHO05D010184 1.7e-36 156.4 77 83.1
Sc10g0000030 Simmondsia chinensis HOM05D008019 ORTHO05D010184 5.1e-33 144.8 127 59.1
Zm00001eb101810 Zea mays HOM05D008019 ORTHO05D010184 2.0e-29 132.9 75 70.7
Zm00001eb101800 Zea mays HOM05D008019 ORTHO05D010184 3.4e-29 132.1 75 69.3
Gohir.D12G096933 Gossypium hirsutum HOM05D008019 ORTHO05D010184 1.5e-24 116.7 105 58.1
SEGI_33125 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 8.0e-18 94.4 51 74.5
Lalb_Chr19g0132141 Lupinus albus HOM05D008019 ORTHO05D010184 2.2e-07 59.7 34 76.5
SEGI_37443 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 2.8e-07 59.3 32 71.9
Medtr8g036830 Medicago truncatula HOM05D008019 ORTHO05D010184 8.2e-07 57.8 29 75.9


User provided reference genes

Program Settings