Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 9.4e-181 636.7 318 100.0
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 3.4e-154 548.5 332 86.4
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 4.3e-141 505.0 324 81.2
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 5.6e-141 504.6 325 80.9
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 3.5e-135 485.3 322 77.3
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 3.5e-135 485.3 329 78.1
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 8.6e-134 480.7 313 79.6
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 1.1e-133 480.3 313 78.9
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 2.5e-133 479.2 320 78.4
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 2.1e-132 476.1 320 78.1
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.1e-132 476.1 325 79.1
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.7e-132 474.9 320 75.9
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.1e-131 473.8 321 76.9
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.1e-131 473.8 321 77.6
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 1.8e-131 473.0 331 75.8
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 2.3e-131 472.6 326 78.5
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 6.8e-131 471.1 328 76.5
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 8.9e-131 470.7 328 75.6
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 8.9e-131 470.7 323 75.5
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 8.9e-131 470.7 323 75.5
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.5e-130 469.9 322 75.5
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 3.4e-130 468.8 325 76.3
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 4.4e-130 468.4 325 74.8
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 5.8e-130 468.0 293 81.6
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 9.8e-130 467.2 326 75.5
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 9.8e-130 467.2 324 76.2
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 1.3e-129 466.8 320 75.3
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 2.2e-129 466.1 323 76.5
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 2.9e-129 465.7 323 77.1
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 3.7e-129 465.3 290 82.1
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 4.9e-129 464.9 304 77.6
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 6.4e-129 464.5 322 77.3
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 1.9e-128 463.0 322 77.0
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 1.9e-128 463.0 324 75.3
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 2.4e-128 462.6 289 82.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 5.4e-128 461.5 323 75.9
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 5.4e-128 461.5 327 76.1
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 5.4e-128 461.5 327 76.1
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 5.4e-128 461.5 323 75.9
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 5.4e-128 461.5 322 74.5
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 7.0e-128 461.1 335 74.0
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 9.2e-128 460.7 325 76.0
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 9.2e-128 460.7 329 75.1
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 9.2e-128 460.7 329 75.1
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 9.2e-128 460.7 295 79.3
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.2e-127 460.3 326 76.1
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.7e-127 459.1 322 74.2
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 4.6e-127 458.4 328 75.6
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 7.8e-127 457.6 329 74.8
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 1.3e-126 456.8 324 74.4
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.3e-126 456.8 320 75.3
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.7e-126 456.4 325 74.8
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.7e-126 456.4 296 78.7
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.7e-126 456.4 312 76.0
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 2.3e-126 456.1 328 73.2
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 3.0e-126 455.7 323 75.5
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 3.0e-126 455.7 323 75.5
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 3.0e-126 455.7 310 76.5
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 5.0e-126 454.9 326 74.8
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 5.0e-126 454.9 320 77.5
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 6.6e-126 454.5 341 73.3
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 8.6e-126 454.1 329 74.8
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 8.6e-126 454.1 323 74.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.5e-125 453.4 320 76.2
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 1.9e-125 453.0 284 81.7
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 5.6e-125 451.4 319 74.6
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 1.2e-124 450.3 315 74.3
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 1.6e-124 449.9 336 72.9
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 2.8e-124 449.1 322 73.3
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 2.8e-124 449.1 319 74.9
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 4.7e-124 448.4 317 76.0
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 6.2e-124 448.0 329 72.0
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.8e-123 446.4 320 75.6
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.8e-123 446.4 318 75.5
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 4.0e-123 445.3 325 74.2
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 5.2e-123 444.9 280 82.9
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 6.8e-123 444.5 318 74.8
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 8.9e-123 444.1 326 73.3
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.6e-122 442.6 306 75.8
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 2.6e-122 442.6 316 74.1
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.9e-121 438.3 282 80.1
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 6.4e-121 438.0 338 69.2
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.1e-120 437.2 319 73.0
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 3.2e-120 435.6 334 70.7
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 7.1e-120 434.5 287 77.4
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 3.5e-119 432.2 333 69.4
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 7.8e-119 431.0 321 71.7
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 3.0e-118 429.1 359 65.5
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 3.3e-117 425.6 331 70.7
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 9.5e-117 424.1 331 71.3
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 6.2e-116 421.4 324 69.8
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 3.1e-115 419.1 319 69.6
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 4.0e-115 418.7 304 72.0
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 8.9e-115 417.5 305 72.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 8.9e-115 417.5 290 75.2
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 7.6e-114 414.5 323 68.7
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 4.9e-113 411.8 329 67.8
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 9.2e-112 407.5 306 71.9
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.3e-110 403.7 310 70.3
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.5e-109 400.2 229 87.8
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 9.0e-107 391.0 233 84.5
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 6.6e-102 374.8 316 64.9
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 1.4e-99 367.1 242 76.0
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 3.4e-98 362.5 239 75.7
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 1.4e-96 357.1 287 67.9
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 2.4e-96 356.3 290 65.2
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 7.9e-95 351.3 250 72.4
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 1.1e-93 347.4 247 68.4
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.1e-93 347.4 274 68.2
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 9.6e-93 344.4 331 58.0
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.1e-79 300.1 218 72.0
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 6.3e-76 288.5 247 61.1
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 1.1e-75 287.7 159 89.9
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 9.4e-72 274.6 231 62.8
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 1.8e-70 270.4 204 63.7
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.1e-70 268.9 177 79.7
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 5.1e-70 268.9 217 62.2
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 2.0e-69 266.9 202 70.8
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 1.0e-62 244.6 229 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 1.4e-54 217.6 233 53.6
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 2.3e-54 216.9 187 63.1
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 4.1e-51 206.1 179 63.1
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 9.1e-51 204.9 179 62.6
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 2.0e-50 203.8 118 85.6
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 5.0e-49 199.1 190 61.1
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 1.6e-47 194.1 107 90.7
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 5.2e-46 189.1 137 75.2
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 1.7e-44 184.1 108 86.1
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 3.0e-30 136.7 210 41.0
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 1.4e-27 127.9 232 35.8
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 4.0e-22 109.8 76 72.4
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 6.8e-22 109.0 73 74.0
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.6e-21 107.1 124 46.0
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 7.0e-19 99.0 50 96.0
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 9.2e-19 98.6 200 33.0
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 5.6e-16 89.4 65 67.7
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 2.1e-15 87.4 110 50.9
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 2.8e-15 87.0 83 50.6
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 6.8e-14 82.4 93 53.8


User provided reference genes

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