Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 3.2e-90 335.1 174 100.0
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.9e-67 258.8 160 81.9
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 4.2e-66 255.0 155 83.2
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 7.2e-66 254.2 160 80.6
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.3e-64 250.0 159 78.0
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.1e-63 246.9 165 75.2
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 1.5e-63 246.5 155 78.7
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 4.3e-63 245.0 160 78.8
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 4.3e-63 245.0 160 78.8
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.4e-63 244.2 160 79.4
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 1.7e-62 243.0 162 75.9
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.8e-62 242.3 162 76.5
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 6.3e-62 241.1 157 74.5
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 8.2e-62 240.7 160 76.9
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 8.2e-62 240.7 160 76.9
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.1e-61 240.4 153 81.0
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.4e-61 240.0 179 72.6
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 3.1e-61 238.8 155 79.4
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 6.9e-61 237.7 153 79.7
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 9.1e-61 237.3 167 74.9
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 1.2e-60 236.9 162 70.4
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.5e-60 236.5 157 73.2
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.6e-60 235.7 160 75.6
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.6e-60 235.7 157 72.6
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.5e-60 235.0 177 70.1
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 4.5e-60 235.0 177 67.8
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 5.9e-60 234.6 170 69.4
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.0e-59 233.8 160 76.2
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.7e-59 233.0 158 74.7
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.7e-59 233.0 170 68.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 6.5e-59 231.1 163 71.8
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 6.5e-59 231.1 162 74.1
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 8.5e-59 230.7 161 72.0
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.1e-58 230.3 168 70.8
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.5e-58 229.2 176 69.3
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.2e-58 228.8 189 66.7
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 7.2e-58 227.6 160 72.5
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 9.4e-58 227.3 148 79.1
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 4.7e-57 224.9 152 77.0
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.0e-56 223.8 160 74.4
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.4e-56 223.4 163 69.9
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.8e-56 223.0 179 65.4
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 6.7e-56 221.1 157 71.3
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 6.7e-56 221.1 158 71.5
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-55 220.3 150 80.0
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.1e-55 220.3 170 68.8
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.5e-55 219.9 160 71.9
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-55 219.5 156 74.4
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.6e-55 219.2 158 73.4
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 3.3e-55 218.8 160 73.1
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 3.3e-55 218.8 156 73.7
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.4e-55 218.4 157 73.9
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 4.4e-55 218.4 158 73.4
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 2.2e-54 216.1 150 74.0
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.8e-54 215.7 158 71.5
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.8e-54 215.7 147 76.9
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.8e-54 215.7 153 73.2
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.8e-54 215.7 158 69.6
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 3.7e-54 215.3 162 68.5
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 4.8e-54 214.9 145 76.6
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.3e-54 214.5 164 70.1
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.2e-54 214.2 166 65.7
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.1e-53 213.8 163 68.7
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.8e-53 213.0 163 69.3
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.8e-53 213.0 155 71.6
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.4e-53 212.6 158 69.6
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 6.9e-53 211.1 158 71.5
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.2e-52 210.3 158 70.9
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.2e-52 210.3 194 59.8
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.5e-52 209.9 149 72.5
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.0e-52 209.5 147 73.5
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.4e-52 208.8 164 65.2
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.4e-52 208.8 162 65.4
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 4.5e-52 208.4 153 71.2
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.9e-52 208.0 135 77.0
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 1.0e-51 207.2 149 71.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 1.3e-51 206.8 158 68.4
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.3e-51 206.8 151 69.5
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.2e-51 206.1 161 70.8
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 3.8e-51 205.3 172 62.2
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 3.8e-51 205.3 158 69.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 5.0e-51 204.9 143 76.9
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 8.5e-51 204.1 138 76.8
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 8.5e-51 204.1 146 72.6
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 1.1e-50 203.8 161 69.6
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 1.1e-50 203.8 161 69.6
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 2.5e-50 202.6 156 69.9
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.5e-50 202.6 161 69.6
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 2.5e-50 202.6 156 69.9
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 5.5e-50 201.4 151 66.9
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 9.4e-50 200.7 156 69.2
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 9.4e-50 200.7 142 70.4
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.1e-49 199.5 138 76.1
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.6e-49 198.7 137 75.9
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 3.9e-48 195.3 133 75.2
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 8.8e-48 194.1 151 64.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 1.5e-47 193.4 122 79.5
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.5e-47 193.4 136 72.1
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.3e-47 192.2 136 73.5
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 7.4e-47 191.0 127 78.7
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.8e-45 186.4 165 61.2
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 4.1e-45 185.3 149 63.1
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 7.0e-45 184.5 108 87.0
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 2.6e-44 182.6 176 56.2
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 3.5e-44 182.2 122 75.4
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 5.9e-44 181.4 157 59.9
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.5e-43 177.9 127 76.4
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 2.5e-42 176.0 127 75.6
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 4.2e-42 175.3 102 89.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.2e-42 174.5 104 84.6
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 3.6e-41 172.2 104 81.7
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 4.7e-41 171.8 110 80.9
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 6.1e-41 171.4 105 82.9
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.4e-37 159.5 120 65.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 9.1e-37 157.5 109 76.1
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.7e-36 156.0 105 77.1
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.0e-35 154.1 101 80.2
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 2.7e-33 146.0 105 69.5
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.4e-32 143.7 136 55.9
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.4e-32 143.7 115 63.5
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.0e-32 142.5 101 74.3
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.7e-30 136.7 119 53.8
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.2e-30 136.3 84 79.8
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 4.1e-29 132.1 81 82.7
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.5e-28 129.0 75 88.0
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 3.5e-20 102.4 145 48.3
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.0e-19 100.9 130 45.4
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.3e-19 99.8 130 42.3
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.5e-18 96.3 111 47.7
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.8e-17 92.8 57 82.5
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.0e-16 90.9 127 37.8
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.5e-15 87.0 63 66.7
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 9.2e-13 77.8 53 67.9
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 1.2e-09 67.4 49 67.3
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 3.1e-08 62.8 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 3.1e-08 62.8 48 66.7
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.0e-07 60.1 39 74.4
CsaV3_3G034220 Cucumis sativus L. HOM05D000289 ORTHO05D000208 9.8e-07 57.8 115 35.7
Glyma.08G224900 Glycine max HOM05D005569 ORTHO05D007052 8.3e-06 54.7 30 76.7


User provided reference genes

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