Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 8.9e-210 733.4 386 100.0
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 3.6e-158 562.0 396 75.3
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 2.2e-155 552.7 404 76.2
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 4.2e-151 538.5 395 73.4
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 2.7e-150 535.8 394 73.1
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 8.2e-147 524.2 410 72.2
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 3.1e-146 522.3 391 71.4
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 3.8e-144 515.4 406 70.2
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 5.5e-143 511.5 389 70.7
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 1.4e-141 506.9 408 67.9
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.8e-141 504.2 398 68.8
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 2.0e-140 503.1 378 70.9
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 6.3e-139 498.0 395 66.8
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 6.3e-139 498.0 391 68.3
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 1.2e-137 493.8 389 67.6
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 3.5e-137 492.3 387 69.0
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.7e-136 490.0 394 64.7
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 2.2e-136 489.6 391 66.5
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 5.0e-136 488.4 394 67.0
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 5.0e-136 488.4 400 67.5
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 5.0e-136 488.4 396 67.7
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.5e-136 488.0 397 66.5
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.5e-136 488.0 397 67.3
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 2.5e-135 486.1 397 67.0
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 5.5e-135 485.0 390 67.4
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 7.2e-135 484.6 387 65.4
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 7.2e-135 484.6 372 70.4
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 2.7e-134 482.6 372 69.9
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 6.1e-134 481.5 404 65.8
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 8.0e-134 481.1 387 65.6
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 1.0e-133 480.7 385 64.9
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 1.0e-133 480.7 400 66.0
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 8.8e-133 477.6 424 63.7
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 2.6e-132 476.1 389 66.1
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 3.4e-132 475.7 389 63.8
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 5.7e-132 474.9 412 61.2
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 1.8e-130 469.9 359 71.3
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 4.1e-130 468.8 354 70.6
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 7.0e-130 468.0 398 63.6
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 1.2e-129 467.2 385 68.1
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 1.6e-129 466.8 395 61.8
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.0e-128 464.2 396 61.4
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.3e-128 463.8 389 63.2
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 2.3e-128 463.0 392 65.1
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 3.6e-126 455.7 407 59.7
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 2.3e-125 453.0 414 58.7
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 6.8e-125 451.4 385 64.9
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 6.8e-125 451.4 382 64.1
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 1.5e-124 450.3 382 63.9
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 4.4e-124 448.7 408 62.5
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 4.4e-124 448.7 324 71.9
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 4.4e-124 448.7 354 67.2
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 5.7e-124 448.4 419 58.5
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 5.4e-122 441.8 374 63.4
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 2.0e-121 439.9 382 63.1
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 2.9e-120 436.0 413 57.1
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 6.6e-120 434.9 345 65.8
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 1.1e-119 434.1 351 66.4
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 1.1e-119 434.1 379 63.9
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 3.6e-118 429.1 332 67.8
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 3.0e-117 426.0 332 68.1
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 3.2e-114 416.0 380 59.5
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 2.0e-113 413.3 331 66.5
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 1.5e-111 407.1 333 65.2
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 3.6e-110 402.5 384 58.6
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 2.3e-109 399.8 378 55.8
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 8.3e-107 391.3 398 56.8
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 1.1e-106 391.0 340 61.8
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 5.4e-106 388.7 387 56.6
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 6.0e-105 385.2 366 60.4
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 3.9e-104 382.5 384 53.6
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 4.3e-103 379.0 275 72.0
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 2.8e-102 376.3 311 68.2
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 4.4e-100 369.0 305 63.6
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 8.1e-94 348.2 314 60.5
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 3.4e-92 342.8 458 46.3
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 9.9e-92 341.3 391 49.9
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 8.4e-91 338.2 241 73.9
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 9.6e-87 324.7 367 51.0
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 1.1e-85 321.2 394 49.2
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 2.4e-85 320.1 388 49.2
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 1.4e-82 310.8 215 74.4
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 1.3e-80 304.3 269 63.2
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 2.8e-78 296.6 201 75.6
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 9.0e-77 291.6 186 80.1
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.3e-70 271.2 331 47.1
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.1e-70 270.4 296 53.0
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 1.1e-69 268.1 186 74.2
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 1.1e-66 258.1 401 42.1
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 2.3e-64 250.4 249 57.8
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 6.5e-59 232.3 392 38.0
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.0e-56 224.9 429 35.9
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 2.9e-51 206.8 208 57.2
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 1.4e-50 204.5 139 77.0
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 8.8e-40 168.7 124 72.6
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 9.7e-39 165.2 112 73.2
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 1.4e-37 161.4 120 70.8
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 2.7e-33 147.1 103 72.8
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 1.4e-32 144.8 99 75.8
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 4.8e-30 136.3 348 32.8
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 1.6e-28 131.3 87 77.0
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 1.9e-26 124.4 160 46.2
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 2.2e-22 110.9 87 62.1
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 5.0e-19 99.8 127 48.8
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 1.0e-16 92.0 77 51.9
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 1.7e-14 84.7 356 26.7
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 1.9e-10 71.2 57 61.4
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 7.2e-10 69.3 55 67.3
Lsat_1_v5_gn_1_55000 Lactuca sativa HOM05D001509 ORTHO05D001361 6.1e-09 66.2 251 27.5
ECA248G2102 Erigeron canadensis HOM05D001509 ORTHO05D001361 6.8e-08 62.8 213 27.2
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 2.2e-06 57.8 220 22.3
CiPaw.09G187400 Carya illinoinensis HOM05D001509 ORTHO05D001361 2.8e-06 57.4 263 25.1
Ca_08796_v3 Cicer arietinum L. HOM05D001509 ORTHO05D001361 2.8e-06 57.4 215 24.7
COL.COLO4_14876 Corchorus olitorius HOM05D001509 ORTHO05D001361 2.8e-06 57.4 216 23.1
Gohir.D04G118300 Gossypium hirsutum HOM05D001509 ORTHO05D001361 3.7e-06 57.0 215 22.8
HanXRQChr01g0026541 Helianthus annuus HOM05D001509 ORTHO05D001361 3.7e-06 57.0 199 26.6
MD12G1136200 Malus domestica HOM05D001509 ORTHO05D001361 3.7e-06 57.0 211 25.1
SEGI_17616 Sequoiadendron giganteum HOM05D001509 ORTHO05D001361 3.7e-06 57.0 215 23.7
HPP92_021784 Vanilla planifolia HOM05D001509 ORTHO05D001361 3.7e-06 57.0 242 23.6
TPR.G34754 Trifolium pratense HOM05D001509 ORTHO05D001361 4.9e-06 56.6 192 26.0
Glyma.05G135200 Glycine max HOM05D001509 ORTHO05D001361 6.3e-06 56.2 201 26.9
Pp3c2_28020 Physcomitrium patens HOM05D001509 ORTHO05D001361 6.3e-06 56.2 186 23.1
Aqoxy4G03054 Aquilegia oxysepala HOM05D001509 ORTHO05D001361 8.3e-06 55.8 202 24.3
Gohir.A04G079100 Gossypium hirsutum HOM05D001509 ORTHO05D001361 8.3e-06 55.8 215 22.8
Gorai.009G423400 Gossypium raimondii HOM05D001509 ORTHO05D001361 8.3e-06 55.8 215 22.8
PSO206G0027 Papaver somniferum HOM05D001509 ORTHO05D001361 8.3e-06 55.8 222 24.8
PSO339G1527 Papaver somniferum HOM05D001509 ORTHO05D001361 8.3e-06 55.8 224 24.6


User provided reference genes

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