Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 9.2e-272 939.9 563 100.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 3.9e-206 721.8 582 76.5
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 3.4e-202 708.8 563 76.2
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.7e-193 679.9 568 72.7
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.2e-191 673.7 574 74.0
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 4.7e-191 671.8 584 70.5
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 6.7e-190 667.9 567 73.7
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.8e-190 667.5 569 73.3
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 7.7e-186 654.4 681 61.8
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.9e-185 652.5 564 71.8
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 5.0e-185 651.7 571 73.4
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.7e-183 646.0 547 74.2
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 2.7e-183 646.0 585 71.1
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.0e-182 644.0 575 69.7
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.4e-182 643.7 567 69.3
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.5e-181 640.2 572 72.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 5.7e-181 638.3 546 71.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.3e-180 637.1 525 76.4
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.6e-178 629.4 488 76.8
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.3e-177 627.1 572 71.2
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 2.9e-177 625.9 565 70.8
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 2.9e-177 625.9 566 71.9
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 4.2e-176 622.1 575 71.1
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 6.1e-175 618.2 564 68.3
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 2.3e-174 616.3 568 66.7
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 2.3e-174 616.3 559 71.7
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 2.6e-173 612.8 570 69.3
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 3.4e-173 612.5 547 70.7
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 9.7e-173 610.9 547 70.6
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.7e-172 610.1 550 69.6
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.8e-171 606.7 578 67.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.1e-171 605.9 570 66.3
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 9.1e-171 604.4 571 66.0
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.0e-169 600.9 564 65.6
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 5.5e-168 595.1 560 66.6
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 7.2e-168 594.7 541 71.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 2.1e-167 593.2 547 69.5
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 2.7e-167 592.8 549 67.0
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.4e-166 590.5 519 69.7
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.5e-165 587.0 580 66.9
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 7.5e-165 584.7 552 67.2
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.7e-164 582.4 588 65.8
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 6.3e-164 581.6 554 68.1
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 6.3e-164 581.6 572 65.0
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.3e-161 573.2 564 65.6
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 4.2e-160 568.9 569 67.0
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 5.5e-160 568.5 491 74.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 7.2e-160 568.2 548 67.3
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 7.2e-160 568.2 550 67.5
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 3.6e-159 565.8 509 65.0
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 3.6e-159 565.8 604 62.3
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 4.7e-159 565.5 556 66.4
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 6.8e-158 561.6 498 70.5
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 5.7e-157 558.5 597 60.6
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 7.5e-157 558.1 489 70.3
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.8e-156 556.2 583 63.3
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 4.9e-156 555.4 549 66.3
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 4.1e-155 552.4 617 57.4
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 3.5e-154 549.3 513 65.3
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 5.6e-152 542.0 524 69.7
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.1e-151 540.0 490 70.0
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 2.0e-149 533.5 578 62.1
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 9.8e-149 531.2 581 57.7
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.7e-148 529.3 479 70.1
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 3.7e-148 529.3 542 64.2
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 3.2e-147 526.2 550 64.7
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.2e-147 526.2 491 68.6
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 4.6e-146 522.3 516 62.2
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 5.0e-145 518.8 565 60.7
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 3.3e-144 516.2 549 65.4
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 2.0e-141 506.9 578 61.1
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 3.2e-139 499.6 388 79.4
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.3e-137 494.2 584 60.1
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.0e-137 493.0 572 54.4
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.1e-137 492.3 476 62.8
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.5e-136 490.0 553 54.1
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 1.2e-135 487.6 540 54.8
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.8e-135 486.5 446 69.1
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.1e-134 484.6 564 53.9
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 4.0e-134 482.6 538 54.6
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 5.2e-134 482.3 552 58.0
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.5e-133 480.7 583 58.8
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 2.0e-133 480.3 567 53.8
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 2.4e-131 473.4 557 59.8
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.1e-131 472.6 590 51.9
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 1.2e-130 471.1 557 58.9
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.0e-129 468.0 552 63.8
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 2.3e-129 466.8 552 62.0
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 3.0e-129 466.5 555 63.6
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-128 464.5 495 65.5
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 1.9e-128 463.8 552 61.8
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 1.9e-128 463.8 552 61.8
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 3.3e-128 463.0 548 62.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 3.3e-128 463.0 566 51.2
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 4.3e-128 462.6 544 60.3
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.6e-127 460.7 430 70.0
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 3.4e-125 453.0 358 74.3
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.3e-124 451.1 446 67.3
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.6e-119 433.0 494 53.6
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.0e-117 427.2 323 72.8
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 4.3e-112 409.5 323 70.6
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 4.0e-102 376.3 355 75.2
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 3.9e-89 333.2 489 54.4
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.2e-85 321.6 217 81.6
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 2.5e-83 313.9 205 81.5
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.6e-82 311.2 233 67.8
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 4.6e-82 309.7 216 75.5
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 3.6e-66 256.9 248 57.7
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.8e-65 254.6 239 58.6
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.8e-65 254.6 248 58.1
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 2.3e-65 254.2 241 58.5
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 8.5e-60 235.7 279 50.5
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.2e-58 231.9 298 46.0
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.1e-54 218.8 323 40.9
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.8e-54 218.0 168 70.8
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 5.4e-54 216.5 226 54.4
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 3.2e-51 207.2 222 66.7
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 8.3e-47 192.6 248 50.0
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 6.6e-44 183.0 214 44.9
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.5e-43 181.8 186 59.1
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.9e-43 181.4 230 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.2e-40 172.2 254 40.6
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.7e-39 168.3 272 40.1
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.2e-33 146.7 106 74.5
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.5e-32 145.2 127 57.5
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 8.3e-31 139.4 196 48.0
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.4e-30 137.9 195 49.2
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.7e-28 131.7 111 66.7
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.1e-27 129.0 104 71.2
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.1e-22 110.5 66 78.8
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 3.5e-21 107.5 69 79.7
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.7e-20 105.1 120 61.7
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-20 105.1 133 48.9
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-19 101.7 75 69.3
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.3e-19 100.9 91 57.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 9.5e-19 99.4 181 44.2
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 8.1e-18 96.3 152 41.4
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.1e-17 94.4 76 63.2
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.2e-16 92.4 103 60.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-16 91.3 69 65.2
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 2.2e-15 88.2 113 54.9
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.4e-14 85.5 107 75.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 3.2e-14 84.3 251 31.9
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 9.2e-14 82.8 116 44.8
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 8.6e-12 76.3 113 45.1
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-11 75.5 69 56.5
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 7.3e-11 73.2 47 83.0
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 7.3e-11 73.2 44 79.5
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 1.2e-10 72.4 40 87.5
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.6e-10 72.0 70 57.1
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.1e-10 71.6 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.1e-10 71.6 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.1e-10 71.6 39 87.2
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 3.6e-10 70.9 58 62.1
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 6.2e-10 70.1 257 28.8
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 2.4e-09 68.2 91 44.0
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 3.1e-09 67.8 54 64.8
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 1.2e-08 65.9 69 66.7
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 5.8e-08 63.5 73 58.9
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.7e-07 62.0 60 56.7
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 2.2e-07 61.6 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 2.2e-07 61.6 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 2.2e-07 61.6 40 82.5
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 8.4e-07 59.7 203 32.5
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 8.4e-07 59.7 52 61.5
SHI35501 Sapria himalayana HOM05D004479 ORTHO05D005597 2.4e-06 58.2 100 39.0
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 5.4e-06 57.0 50 72.0
SHI37143 Sapria himalayana HOM05D000024 ORTHO05D000006 5.4e-06 57.0 184 31.0


User provided reference genes

Program Settings