Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.8e-221 771.2 376 100.0
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.1e-193 679.9 375 87.2
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.7e-184 649.4 378 84.4
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.4e-182 641.7 402 77.1
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 3.8e-181 638.3 377 81.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 6.5e-181 637.5 378 81.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.1e-180 636.7 379 82.6
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 9.4e-180 633.6 377 81.4
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.2e-179 633.3 377 82.5
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.6e-179 632.9 377 81.2
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.7e-179 632.1 377 81.2
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 2.7e-179 632.1 377 82.5
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.8e-178 629.4 377 80.9
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.8e-178 629.4 376 80.3
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 5.1e-178 627.9 377 80.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 5.1e-178 627.9 378 80.4
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.1e-177 626.7 377 82.5
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.0e-177 625.9 376 79.5
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.0e-177 625.9 376 80.1
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 7.4e-177 624.0 377 80.1
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.8e-176 621.3 391 78.0
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.2e-174 616.7 401 76.3
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.7e-173 612.8 381 79.8
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.9e-173 612.1 378 79.4
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.8e-173 611.7 376 81.6
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 5.0e-173 611.3 380 78.7
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.1e-172 610.1 375 77.6
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.1e-172 610.1 377 78.8
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.5e-172 609.8 381 78.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.2e-171 606.7 378 78.3
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.1e-171 605.9 377 78.8
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 4.7e-171 604.7 372 78.2
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 8.0e-171 604.0 395 76.2
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.0e-170 603.6 343 82.8
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.4e-170 603.2 379 78.6
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.4e-170 603.2 376 77.7
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 4.4e-169 598.2 378 76.5
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 5.7e-169 597.8 375 77.1
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.7e-169 597.0 375 76.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.3e-168 596.7 372 79.6
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 2.8e-168 595.5 377 77.7
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.8e-168 595.5 375 76.8
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.7e-168 595.1 374 75.7
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 4.8e-168 594.7 375 76.3
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 6.3e-168 594.3 378 77.0
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-167 592.8 378 76.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 4.1e-167 591.7 379 76.8
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 5.3e-167 591.3 377 77.5
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 7.0e-167 590.9 376 75.3
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 4.5e-166 588.2 377 76.4
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 4.5e-166 588.2 376 77.4
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 5.9e-166 587.8 377 77.5
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.9e-165 585.5 375 75.7
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.8e-165 585.1 377 74.3
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.5e-164 582.4 378 73.8
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 2.5e-164 582.4 353 79.0
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-163 580.1 377 72.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-163 579.7 368 75.3
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.7e-163 578.9 379 76.3
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 8.0e-163 577.4 378 72.8
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.0e-162 577.0 381 74.0
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.0e-162 575.5 377 73.2
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 4.0e-162 575.1 378 75.9
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 5.2e-162 574.7 318 83.6
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 5.2e-162 574.7 318 84.9
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 5.2e-162 574.7 376 72.9
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.2e-161 573.5 377 72.7
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.6e-161 572.4 378 73.5
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.6e-161 572.4 307 87.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 3.4e-161 572.0 377 72.4
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 5.7e-161 571.2 378 74.6
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.8e-160 568.9 379 73.4
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.1e-159 567.0 380 72.9
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.1e-159 567.0 319 84.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.8e-159 566.2 377 72.7
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-159 565.8 376 72.3
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 2.4e-159 565.8 382 73.8
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 2.4e-159 565.8 376 72.1
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.4e-159 565.8 372 75.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 7.0e-159 564.3 376 72.6
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 7.0e-159 564.3 376 72.6
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 9.1e-159 563.9 376 72.3
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 9.1e-159 563.9 376 72.3
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-158 563.1 374 72.2
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.6e-158 563.1 333 78.7
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 3.5e-158 562.0 373 72.4
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 3.5e-158 562.0 376 72.3
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.3e-157 560.1 378 71.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.7e-157 559.7 328 79.6
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.8e-157 558.5 315 81.3
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.1e-156 557.0 376 71.8
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.5e-156 555.8 380 70.8
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.2e-156 555.1 403 69.2
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 4.2e-156 555.1 349 78.8
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.0e-154 550.4 318 81.4
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.8e-154 549.7 378 69.8
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 3.0e-154 548.9 378 70.9
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 6.8e-154 547.7 378 69.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.5e-153 546.6 378 69.6
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 4.4e-153 545.0 345 71.6
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.7e-152 543.1 317 80.4
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 8.3e-152 540.8 315 79.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.1e-151 540.4 317 79.5
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.4e-151 540.0 377 71.4
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.1e-151 538.5 379 68.9
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.6e-150 536.6 311 80.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 5.9e-150 534.6 377 69.5
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.0e-149 533.9 378 69.0
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-149 532.3 377 68.2
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.8e-147 525.8 317 76.7
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.6e-147 525.4 315 78.4
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.6e-145 519.2 350 75.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.6e-145 519.2 345 75.1
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 5.7e-145 518.1 377 68.2
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 9.8e-145 517.3 317 77.0
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.7e-144 516.5 315 75.2
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.2e-143 512.3 315 76.8
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.3e-140 501.9 348 73.9
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 5.6e-140 501.5 303 73.6
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 9.5e-140 500.7 350 74.0
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 9.5e-140 500.7 322 70.5
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.8e-139 499.2 324 75.6
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 8.9e-138 494.2 323 74.0
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 4.4e-137 491.9 374 65.8
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 9.8e-137 490.7 332 70.5
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-131 473.0 377 64.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.4e-130 470.3 323 74.0
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 3.4e-129 465.7 336 68.2
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-128 462.6 257 82.5
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.2e-126 457.2 293 70.0
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.3e-125 453.8 241 88.4
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.6e-124 448.4 296 66.2
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.2e-121 440.7 289 72.7
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.4e-119 433.7 318 62.3
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 8.6e-117 424.5 286 75.2
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.5e-116 422.9 302 65.6
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 8.1e-115 417.9 323 60.4
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.4e-111 405.2 249 79.5
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 6.0e-110 401.7 303 60.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.5e-108 396.4 379 55.7
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.6e-105 386.3 230 76.5
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 3.8e-104 382.5 234 81.6
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 4.2e-103 379.0 293 61.1
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.2e-96 356.7 196 84.7
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.1e-94 350.1 196 83.7
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-92 344.0 230 70.9
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 4.3e-92 342.4 226 75.2
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 8.7e-85 318.2 220 74.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 3.7e-75 286.2 342 47.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.3e-72 277.7 358 41.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-71 274.6 219 63.9
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.4e-69 267.7 323 44.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.8e-67 260.0 299 47.2
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.8e-66 257.3 306 45.1
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 2.2e-59 233.8 181 66.9
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.3e-53 213.8 153 70.6
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.8e-51 206.8 114 80.7
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 8.8e-45 185.3 336 36.9
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 8.0e-38 162.2 94 84.0
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-37 161.8 131 65.6
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-37 161.4 92 84.8
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 4.0e-37 159.8 94 83.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 6.8e-37 159.1 131 64.9
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-36 157.9 92 82.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 5.7e-36 156.0 131 63.4
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 5.0e-32 142.9 75 85.3
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.5e-31 140.6 97 74.2
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 6.8e-29 132.5 66 90.9
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.2e-27 127.5 74 77.0
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 3.7e-27 126.7 322 30.1
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.7e-25 120.6 99 61.6
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-24 117.9 133 51.1
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 3.0e-24 117.1 92 68.5
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 5.0e-24 116.3 116 55.2
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-23 114.8 64 79.7
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 5.4e-18 96.3 61 68.9
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 7.8e-17 92.4 51 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.3e-16 91.7 268 30.2
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 3.1e-13 80.5 47 80.9
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 2.6e-12 77.4 41 85.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.2e-11 74.3 75 52.0
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 6.0e-09 66.2 39 79.5
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 2.3e-08 64.3 42 66.7
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 2.3e-08 64.3 42 66.7
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.9e-08 63.5 33 90.9


User provided reference genes

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