Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G173198 Manihot esculenta HOM05D002082 ORTHO05D002130 6.4e-38 160.2 79 100.0
Manes.06G173132 Manihot esculenta HOM05D002082 ORTHO05D002130 3.3e-34 147.9 74 97.3
Manes.05G044766 Manihot esculenta HOM05D002082 ORTHO05D002130 3.6e-33 144.4 80 91.2
Manes.05G034100 Manihot esculenta HOM05D002082 ORTHO05D002130 6.2e-33 143.7 74 94.6
Manes.01G256600 Manihot esculenta HOM05D002082 ORTHO05D002130 6.9e-24 113.6 74 73.0
Cfa003924 Carpinus fangiana HOM05D002082 ORTHO05D002130 7.1e-21 103.6 73 67.1
Haze_15507 Corylus avellana HOM05D002082 ORTHO05D002130 2.1e-20 102.1 73 65.8
Sabra02G0127000 Salix brachista HOM05D002082 ORTHO05D002130 1.0e-19 99.8 72 68.1
Sabra14G0061400 Salix brachista HOM05D002082 ORTHO05D002130 1.7e-19 99.0 73 69.9
Potri.014G084600 Populus trichocarpa HOM05D002082 ORTHO05D002130 2.3e-19 98.6 73 69.9
Duzib212G0601 Durio zibethinus HOM05D002082 ORTHO05D002130 3.9e-19 97.8 73 63.0
Potri.002G160000 Populus trichocarpa HOM05D002082 ORTHO05D002130 8.7e-19 96.7 73 65.8
Glyma.09G259200 Glycine max HOM05D002082 ORTHO05D002130 3.3e-18 94.7 73 58.9
MD07G1136900 Malus domestica HOM05D002082 ORTHO05D002130 5.6e-18 94.0 73 60.3
COL.COLO4_20185 Corchorus olitorius HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 61.6
FvH4_7g14290 Fragaria vesca HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 56.2
FAN03G3385 Fragaria x ananassa HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 56.2
FAN06G2330 Fragaria x ananassa HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 56.2
FAN06G4139 Fragaria x ananassa HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 56.2
FAN10G2676 Fragaria x ananassa HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 56.2
QL08p048793 Quercus lobata HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 58.9
RcHm_v2.0_Chr1g0355281 Rosa chinensis HOM05D002082 ORTHO05D002130 9.6e-18 93.2 73 57.5
TWI23G1246 Tripterygium wilfordii HOM05D002082 ORTHO05D002130 2.1e-17 92.0 70 61.4
Psat3g108320 Pisum sativum HOM05D002082 ORTHO05D002130 2.8e-17 91.7 71 56.3
TWI14G1346 Tripterygium wilfordii HOM05D002082 ORTHO05D002130 2.8e-17 91.7 71 59.2
Dinv43818 Davidia involucrata HOM05D002082 ORTHO05D002130 3.6e-17 91.3 72 61.1
Glyma.18G233100 Glycine max HOM05D002082 ORTHO05D002130 4.8e-17 90.9 71 56.3
Atru.chr5.499 Acer truncatum HOM05D002082 ORTHO05D002130 8.1e-17 90.1 70 67.1
FAN10G2557 Fragaria x ananassa HOM05D002082 ORTHO05D002130 8.1e-17 90.1 73 54.8
Lj1g0019851 Lotus japonicus HOM05D002082 ORTHO05D002130 8.1e-17 90.1 71 56.3
Lj3g0021962 Lotus japonicus HOM05D002082 ORTHO05D002130 8.1e-17 90.1 71 53.5
TPR.G37805 Trifolium pratense HOM05D002082 ORTHO05D002130 8.1e-17 90.1 71 56.3
Gohir.D02G024600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.1e-16 89.7 68 63.2
CANSAT56G1625 Cannabis sativa HOM05D002082 ORTHO05D002130 1.4e-16 89.4 71 54.9
Medtr7g077740 Medicago truncatula HOM05D002082 ORTHO05D002130 1.4e-16 89.4 70 57.1
Cpa.g.sc11.5 Carica papaya HOM05D002082 ORTHO05D002130 2.4e-16 88.6 73 58.9
Dinv32485 Davidia involucrata HOM05D002082 ORTHO05D002130 2.4e-16 88.6 72 59.7
Thecc.04G199500 Theobroma cacao HOM05D002082 ORTHO05D002130 2.4e-16 88.6 68 61.8
FAN01G1477 Fragaria x ananassa HOM05D002082 ORTHO05D002130 3.1e-16 88.2 73 53.4
Glyma.03G009000 Glycine max HOM05D002082 ORTHO05D002130 3.1e-16 88.2 74 52.7
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 4.0e-16 87.8 76 51.3
CsaV3_3G008900 Cucumis sativus L. HOM05D002082 ORTHO05D002130 4.0e-16 87.8 68 57.4
Phvul.008G062300 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 6.9e-16 87.0 71 52.1
arahy.Tifrunner.gnm1.ann1.H5386A Arachis hypogaea HOM05D002082 ORTHO05D002130 9.0e-16 86.7 71 53.5
arahy.Tifrunner.gnm1.ann1.Q9SV2L Arachis hypogaea HOM05D002082 ORTHO05D002130 9.0e-16 86.7 71 54.9
Gorai.005G030500 Gossypium raimondii HOM05D002082 ORTHO05D002130 9.0e-16 86.7 68 61.8
Glyma.07G070500 Glycine max HOM05D002082 ORTHO05D002130 2.0e-15 85.5 67 55.2
Gohir.A08G013780 Gossypium hirsutum HOM05D002082 ORTHO05D002130 2.0e-15 85.5 68 61.8
Prupe.2G170700 Prunus persica HOM05D002082 ORTHO05D002130 2.6e-15 85.1 73 54.8
Lalb_Chr04g0256961 Lupinus albus HOM05D002082 ORTHO05D002130 3.4e-15 84.7 70 55.7
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 5.8e-15 84.0 79 55.7
Gohir.D09G199500 Gossypium hirsutum HOM05D002082 ORTHO05D002130 7.6e-15 83.6 68 61.8
Ca_07921_v3 Cicer arietinum L. HOM05D002082 ORTHO05D002130 9.9e-15 83.2 71 54.9
TPR.G10305 Trifolium pratense HOM05D002082 ORTHO05D002130 9.9e-15 83.2 71 52.1
GSVIVG01026934001 Vitis vinifera HOM05D002082 ORTHO05D002130 9.9e-15 83.2 71 56.3
ClCG05G001520 Citrullus lanatus HOM05D002082 ORTHO05D002130 1.3e-14 82.8 68 54.4
Glyma.14G155600 Glycine max HOM05D002082 ORTHO05D002130 1.3e-14 82.8 73 52.1
vmacro20942 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 1.3e-14 82.8 75 56.0
Gohir.A09G205900 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.7e-14 82.4 68 61.8
Psat4g155680 Pisum sativum HOM05D002082 ORTHO05D002130 1.7e-14 82.4 71 50.7
Sed0023491 Sechium edule HOM05D002082 ORTHO05D002130 1.7e-14 82.4 69 53.6
Gorai.006G223200 Gossypium raimondii HOM05D002082 ORTHO05D002130 2.2e-14 82.0 68 60.3
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 2.2e-14 82.0 73 54.8
Sed0019968 Sechium edule HOM05D002082 ORTHO05D002130 2.2e-14 82.0 68 54.4
VMungo0331G0247 Vigna mungo HOM05D002082 ORTHO05D002130 2.2e-14 82.0 70 55.7
Phvul.010G099200 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 4.9e-14 80.9 67 55.2
THA.LOC104825840 Tarenaya hassleriana HOM05D002082 ORTHO05D002130 4.9e-14 80.9 57 64.9
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 6.4e-14 80.5 72 52.8
Eucgr.D02291 Eucalyptus grandis HOM05D002082 ORTHO05D002130 8.4e-14 80.1 67 58.2
Ca_23632_v3 Cicer arietinum L. HOM05D002082 ORTHO05D002130 1.1e-13 79.7 71 50.7
Ciclev10018716m.g Citrus clementina HOM05D002082 ORTHO05D002130 1.1e-13 79.7 68 57.4
Gohir.A03G095500 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.1e-13 79.7 68 57.4
ECA236G0021 Erigeron canadensis HOM05D002082 ORTHO05D002130 1.4e-13 79.3 77 53.2
Gorai.005G129500 Gossypium raimondii HOM05D002082 ORTHO05D002130 1.4e-13 79.3 68 55.9
Medtr8g030750 Medicago truncatula HOM05D002082 ORTHO05D002130 1.4e-13 79.3 67 50.7
MD01G1060900 Malus domestica HOM05D002082 ORTHO05D002130 2.4e-13 78.6 51 68.6
Duzib268G0073 Durio zibethinus HOM05D002082 ORTHO05D002130 3.2e-13 78.2 73 54.8
ECA240G1561 Erigeron canadensis HOM05D000062 ORTHO05D002130 3.2e-13 78.2 77 46.8
Gohir.D02G113800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 3.2e-13 78.2 68 55.9
Lj9A583T65 Lonicera japonica HOM05D002082 ORTHO05D002130 3.2e-13 78.2 50 72.0
arahy.Tifrunner.gnm1.ann1.XE9T79 Arachis hypogaea HOM05D002082 ORTHO05D002130 4.2e-13 77.8 73 50.7
Nn1g01537 Nelumbo nucifera HOM05D002082 ORTHO05D002130 4.2e-13 77.8 62 59.7
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 5.4e-13 77.4 72 54.2
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 7.1e-13 77.0 64 54.7
arahy.Tifrunner.gnm1.ann1.7UV203 Arachis hypogaea HOM05D002082 ORTHO05D002130 9.3e-13 76.6 73 50.7
Actinidia33419 Actinidia chinensis HOM05D002082 ORTHO05D002130 2.1e-12 75.5 70 48.6
Nitab4.5_0006762g0010 Nicotiana tabacum HOM05D002082 ORTHO05D002130 2.7e-12 75.1 69 49.3
Lsat_1_v5_gn_7_4721 Lactuca sativa HOM05D002082 ORTHO05D002130 4.6e-12 74.3 74 52.7
Lalb_Chr17g0339601 Lupinus albus HOM05D002082 ORTHO05D002130 4.6e-12 74.3 71 46.5
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 4.6e-12 74.3 72 50.0
CiPaw.01G061400 Carya illinoinensis HOM05D002082 ORTHO05D002130 6.0e-12 73.9 58 58.6
Aqoxy7G00305 Aquilegia oxysepala HOM05D002082 ORTHO05D002130 7.9e-12 73.6 73 53.4
PGR031G0369 Punica granatum HOM05D002082 ORTHO05D002130 7.9e-12 73.6 75 52.0
Hund16922 Selenicereus undatus HOM05D002082 ORTHO05D002130 1.0e-11 73.2 52 59.6
Ah.05g180600 Amaranthus hybridus HOM05D002082 ORTHO05D002130 1.3e-11 72.8 67 52.2
Lj7A512T28 Lonicera japonica HOM05D002082 ORTHO05D002130 1.8e-11 72.4 67 52.2
Nitab4.5_0000583g0100 Nicotiana tabacum HOM05D002082 ORTHO05D002130 2.3e-11 72.0 81 42.0
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 3.0e-11 71.6 64 51.6
MSTRG.17269 Avicennia marina HOM05D002082 ORTHO05D002130 3.0e-11 71.6 68 47.1
Migut.B01756 Erythranthe guttata HOM05D002082 ORTHO05D002130 5.1e-11 70.9 69 49.3
EL10Ac1g00415 Beta vulgaris HOM05D002082 ORTHO05D002130 6.7e-11 70.5 65 55.4
Cc02_g38040 Coffea canephora HOM05D002082 ORTHO05D002130 6.7e-11 70.5 52 63.5
HanXRQChr04g0121091 Helianthus annuus HOM05D002082 ORTHO05D002130 6.7e-11 70.5 76 47.4
Nn6g33418 Nelumbo nucifera HOM05D002082 ORTHO05D002130 6.7e-11 70.5 67 53.7
PGSC0003DMG400000172 Solanum tuberosum HOM05D002082 ORTHO05D002130 6.7e-11 70.5 72 44.4
Lju41A47G15 Lonicera japonica HOM05D002082 ORTHO05D002130 8.7e-11 70.1 67 50.7
Peaxi162Scf00020g00328 Petunia axillaris HOM05D002082 ORTHO05D002130 8.7e-11 70.1 67 46.3
AUR62022567 Chenopodium quinoa HOM05D002082 ORTHO05D002130 1.1e-10 69.7 64 51.6
HanXRQChr06g0170011 Helianthus annuus HOM05D002082 ORTHO05D002130 1.5e-10 69.3 43 67.4
AUR62004359 Chenopodium quinoa HOM05D002082 ORTHO05D002130 2.5e-10 68.6 48 60.4
HPP92_014791 Vanilla planifolia HOM05D002082 ORTHO05D002130 2.5e-10 68.6 69 46.4
Sopen01g038450 Solanum pennellii HOM05D002082 ORTHO05D002130 3.3e-10 68.2 72 41.7
SGA_v2.0_scaffold95G28833 Striga asiatica HOM05D002082 ORTHO05D002130 3.3e-10 68.2 57 54.4
SalBow3G1736 Salvia bowleyana HOM05D002082 ORTHO05D002130 4.3e-10 67.8 62 53.2
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 5.6e-10 67.4 64 51.6
Oeu053748.1 Olea europaea HOM05D002082 ORTHO05D002130 5.6e-10 67.4 56 51.8
Solyc01g094640.4 Solanum lycopersicum HOM05D002082 ORTHO05D002130 5.6e-10 67.4 67 41.8
Sc23g0002880 Simmondsia chinensis HOM05D002082 ORTHO05D002130 7.4e-10 67.0 52 57.7
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 9.6e-10 66.6 72 47.2
Oeu052948.3 Olea europaea HOM05D002082 ORTHO05D002130 9.6e-10 66.6 58 51.7
Sc26g0000910 Simmondsia chinensis HOM05D002082 ORTHO05D002130 1.3e-09 66.2 52 57.7
THA.LOC104801437 Tarenaya hassleriana HOM05D002082 ORTHO05D002130 1.3e-09 66.2 48 66.7
Lsat_1_v5_gn_3_137221 Lactuca sativa HOM05D002082 ORTHO05D002130 1.6e-09 65.9 72 44.4
Eucgr.E00135 Eucalyptus grandis HOM05D002082 ORTHO05D002130 2.8e-09 65.1 73 43.8
Carub.0006s3682 Capsella rubella HOM05D002082 ORTHO05D002130 3.1e-08 61.6 45 64.4
ATR0680G229 Amborella trichopoda HOM05D002082 ORTHO05D002130 4.0e-08 61.2 75 46.7
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 5.3e-08 60.8 72 41.7
PSO782G2744 Papaver somniferum HOM05D002082 ORTHO05D002130 5.3e-08 60.8 72 41.7
CARHR248540 Cardamine hirsuta HOM05D002082 ORTHO05D002130 6.9e-08 60.5 72 48.6
AL6G53020 Arabidopsis lyrata HOM05D002082 ORTHO05D002130 9.0e-08 60.1 60 53.3
AT4G00440 Arabidopsis thaliana HOM05D002082 ORTHO05D002130 1.2e-07 59.7 73 46.6
Thhalv10028418m.g Eutrema salsugineum HOM05D002082 ORTHO05D002130 1.2e-07 59.7 46 60.9
Aa31LG5G540 Aethionema arabicum HOM05D002082 ORTHO05D002130 1.5e-07 59.3 45 60.0
Sp6g00480 Schrenkiella parvula HOM05D002082 ORTHO05D002130 1.5e-07 59.3 80 43.8
ECA234G4153 Erigeron canadensis HOM05D002082 ORTHO05D002130 7.6e-07 57.0 75 40.0
BcaC04g24174 Brassica carinata HOM05D002082 ORTHO05D002130 1.3e-06 56.2 44 59.1
C09p00380 Brassica napus HOM05D002082 ORTHO05D002130 1.3e-06 56.2 44 59.1
QL12p032830 Quercus lobata HOM05D002082 ORTHO05D002130 1.7e-06 55.8 76 42.1
MBI17_g24689_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 2.2e-06 55.5 72 40.3
A09p00480 Brassica napus HOM05D002082 ORTHO05D002130 2.9e-06 55.1 59 50.8
BraA09t35712Z Brassica rapa HOM05D002082 ORTHO05D002130 8.4e-06 53.5 59 49.2


User provided reference genes

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