Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 5.8e-118 427.6 212 100.0
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 2.1e-88 329.3 206 79.6
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 8.1e-88 327.4 208 77.9
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 9.0e-87 323.9 208 80.3
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 9.0e-87 323.9 205 80.5
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 1.5e-86 323.2 207 77.8
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 2.6e-86 322.4 206 76.7
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 7.6e-86 320.9 208 78.4
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 1.7e-85 319.7 215 77.7
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 2.2e-85 319.3 206 78.6
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 3.8e-85 318.5 207 77.3
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 4.9e-85 318.2 203 78.8
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 4.9e-85 318.2 207 77.8
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 6.4e-85 317.8 204 77.0
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 8.4e-85 317.4 206 76.2
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 1.4e-84 316.6 206 76.7
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 2.4e-84 315.8 206 76.7
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 7.1e-84 314.3 203 74.9
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 2.7e-83 312.4 206 73.8
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 6.0e-83 311.2 206 73.8
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 1.0e-82 310.5 203 74.9
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 1.3e-82 310.1 203 78.8
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 2.3e-82 309.3 205 75.1
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.1e-81 307.0 206 71.8
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 1.1e-81 307.0 200 75.0
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 4.3e-81 305.1 195 77.9
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 4.3e-81 305.1 204 77.0
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 5.6e-81 304.7 203 74.4
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 5.6e-81 304.7 200 74.5
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 5.6e-81 304.7 200 74.5
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 7.3e-81 304.3 203 72.4
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 9.6e-81 303.9 203 74.4
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 9.6e-81 303.9 206 74.8
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 1.3e-80 303.5 203 73.4
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 1.6e-80 303.1 209 75.1
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 2.8e-80 302.4 206 71.8
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.6e-80 302.0 223 68.2
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 4.8e-80 301.6 202 75.7
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 6.2e-80 301.2 200 73.0
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 1.1e-79 300.4 193 77.7
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 1.4e-79 300.1 206 71.4
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 1.8e-79 299.7 205 71.2
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 2.4e-79 299.3 209 71.3
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 2.4e-79 299.3 203 72.4
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 4.0e-79 298.5 203 72.4
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 5.3e-79 298.1 204 73.5
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.2e-78 297.0 203 71.4
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 1.5e-78 296.6 194 75.8
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 2.6e-78 295.8 203 71.4
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 3.4e-78 295.4 205 70.7
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 4.5e-78 295.0 203 71.4
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 4.5e-78 295.0 210 71.0
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 5.8e-78 294.7 203 72.4
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 7.6e-78 294.3 203 72.9
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 1.7e-77 293.1 228 67.1
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 1.7e-77 293.1 200 72.0
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 1.7e-77 293.1 193 74.1
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 2.2e-77 292.7 200 72.5
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.8e-77 292.0 203 70.0
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 6.4e-77 291.2 201 69.2
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 2.3e-74 282.7 199 68.8
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 3.0e-74 282.3 177 79.7
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 8.7e-74 280.8 195 71.8
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 5.6e-73 278.1 234 61.1
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 1.3e-72 276.9 212 65.6
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.3e-72 276.9 206 64.6
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 2.1e-72 276.2 205 65.4
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 2.8e-72 275.8 220 64.5
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 2.4e-71 272.7 206 67.0
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 2.9e-69 265.8 199 67.8
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 3.8e-69 265.4 202 68.3
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 4.9e-69 265.0 192 69.8
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 2.5e-68 262.7 199 65.8
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 5.5e-68 261.5 182 73.1
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 7.9e-67 257.7 190 67.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 1.0e-66 257.3 190 67.4
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 1.0e-66 257.3 195 65.6
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 1.8e-66 256.5 202 61.9
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 4.3e-65 251.9 168 72.6
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 6.5e-61 238.0 165 70.3
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 1.9e-60 236.5 205 57.1
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 1.5e-57 226.9 192 57.8
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 9.7e-57 224.2 156 71.8
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 3.7e-56 222.2 160 69.4
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 5.1e-50 201.8 206 54.4
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 3.3e-49 199.1 138 70.3
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 4.8e-48 195.3 139 72.7
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 1.2e-46 190.7 130 72.3
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 1.2e-46 190.7 130 72.3
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 4.2e-44 182.2 147 66.7
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 7.9e-43 177.9 182 48.9
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 6.7e-42 174.9 172 55.8
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 8.2e-40 167.9 127 69.3
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 2.0e-38 163.3 189 43.9
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 8.5e-37 157.9 195 46.2
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 9.4e-36 154.5 165 53.3
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 8.0e-35 151.4 198 40.4
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 9.7e-33 144.4 132 52.3
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.2e-30 137.5 115 62.6
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 8.5e-29 131.3 182 45.1
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 4.2e-28 129.0 123 50.4
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 2.3e-26 123.2 97 68.0
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 2.8e-24 116.3 84 67.9
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 6.3e-24 115.2 68 76.5
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.4e-23 114.0 76 76.3
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 1.3e-21 107.5 159 44.0
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 3.8e-21 105.9 75 70.7
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 1.6e-19 100.5 111 53.2
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 6.8e-18 95.1 178 34.3
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 7.5e-17 91.7 89 52.8
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 9.8e-17 91.3 162 39.5
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 3.7e-16 89.4 64 70.3
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 7.5e-09 65.1 42 69.0
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 3.2e-07 59.7 44 65.9
TPR.G22507 Trifolium pratense HOM05D006956 ORTHO05D008824 5.4e-07 58.9 37 73.0
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.7e-06 56.6 149 22.1
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 7.8e-06 55.1 147 25.9
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 7.8e-06 55.1 90 40.0


User provided reference genes

Program Settings