Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G170500 Manihot esculenta HOM05D007991 ORTHO05D010158 7.3e-37 156.8 82 100.0
Manes.06G170901 Manihot esculenta HOM05D007991 ORTHO05D010158 8.1e-36 153.3 82 97.6
Ciclev10023629m.g Citrus clementina HOM05D007991 ORTHO05D010158 1.4e-19 99.4 74 70.3
Prupe.4G140900 Prunus persica HOM05D007991 ORTHO05D010158 2.4e-19 98.6 54 87.0
Medtr2g069650 Medicago truncatula HOM05D007991 ORTHO05D010158 5.3e-19 97.4 83 68.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 9.0e-19 96.7 69 73.9
Lsat_1_v5_gn_7_112301 Lactuca sativa HOM05D007991 ORTHO05D010158 9.0e-19 96.7 55 87.3
Atru.chr8.1056 Acer truncatum HOM05D007991 ORTHO05D010158 1.2e-18 96.3 55 85.5
Cpa.g.sc10.36 Carica papaya HOM05D007991 ORTHO05D010158 1.2e-18 96.3 78 69.2
QL04p074011 Quercus lobata HOM05D007991 ORTHO05D010158 1.5e-18 95.9 80 66.2
GSVIVG01035227001 Vitis vinifera HOM05D007991 ORTHO05D010158 2.0e-18 95.5 70 72.9
GSVIVG01012568001 Vitis vinifera HOM05D007991 ORTHO05D010158 2.6e-18 95.1 79 65.8
Ca_03685_v3 Cicer arietinum L. HOM05D007991 ORTHO05D010158 1.0e-17 93.2 69 72.5
PGR042G3415 Punica granatum HOM05D007991 ORTHO05D010158 1.0e-17 93.2 61 73.8
Nn7g37867 Nelumbo nucifera HOM05D007991 ORTHO05D010158 1.3e-17 92.8 71 71.8
TPR.G9765 Trifolium pratense HOM05D007991 ORTHO05D010158 1.7e-17 92.4 70 72.9
TWI39G0184 Tripterygium wilfordii HOM05D007991 ORTHO05D010158 1.7e-17 92.4 53 83.0
MELO3C010561.2 Cucumis melo HOM05D007991 ORTHO05D010158 2.9e-17 91.7 69 69.6
Glyma.08G172800 Glycine max HOM05D007991 ORTHO05D010158 3.8e-17 91.3 70 64.3
Lalb_Chr19g0133391 Lupinus albus HOM05D007991 ORTHO05D010158 3.8e-17 91.3 70 70.0
Aqoxy6G00820 Aquilegia oxysepala HOM05D007991 ORTHO05D010158 6.5e-17 90.5 81 61.7
Lalb_Chr03g0031611 Lupinus albus HOM05D007991 ORTHO05D010158 6.5e-17 90.5 53 81.1
Peaxi162Scf00452g00812 Petunia axillaris HOM05D007991 ORTHO05D010158 6.5e-17 90.5 53 81.1
CAN.G943.33 Capsicum annuum HOM05D007991 ORTHO05D010158 8.4e-17 90.1 55 78.2
ClCG11G016360 Citrullus lanatus HOM05D007991 ORTHO05D010158 8.4e-17 90.1 81 63.0
ClCG11G016370 Citrullus lanatus HOM05D007991 ORTHO05D010158 8.4e-17 90.1 81 63.0
Solyc07g066400.1 Solanum lycopersicum HOM05D007991 ORTHO05D010158 1.1e-16 89.7 55 80.0
Aa31LG8G190 Aethionema arabicum HOM05D007991 ORTHO05D010158 1.4e-16 89.4 70 64.3
Ah.07g206310 Amaranthus hybridus HOM05D007991 ORTHO05D010158 1.4e-16 89.4 85 56.5
Psat1g011440 Pisum sativum HOM05D007991 ORTHO05D010158 1.4e-16 89.4 53 81.1
RcHm_v2.0_Chr5g0026701 Rosa chinensis HOM05D007991 ORTHO05D010158 1.9e-16 89.0 73 63.0
PGSC0003DMG400022239 Solanum tuberosum HOM05D007991 ORTHO05D010158 1.9e-16 89.0 55 80.0
COL.COLO4_04148 Corchorus olitorius HOM05D007991 ORTHO05D010158 2.5e-16 88.6 53 81.1
Lj3g0014492 Lotus japonicus HOM05D007991 ORTHO05D010158 2.5e-16 88.6 66 66.7
AT3G12960 Arabidopsis thaliana HOM05D007991 ORTHO05D010158 3.2e-16 88.2 70 67.1
COL.COLO4_28875 Corchorus olitorius HOM05D007991 ORTHO05D010158 5.5e-16 87.4 79 62.0
MD05G1219200 Malus domestica HOM05D007991 ORTHO05D010158 5.5e-16 87.4 79 58.2
Sopen07g034570 Solanum pennellii HOM05D007991 ORTHO05D010158 5.5e-16 87.4 55 80.0
Gorai.007G003200 Gossypium raimondii HOM05D007991 ORTHO05D010158 9.3e-16 86.7 58 74.1
AL3G24640 Arabidopsis lyrata HOM05D007991 ORTHO05D010158 1.2e-15 86.3 53 79.2
Duzib205G1447 Durio zibethinus HOM05D007991 ORTHO05D010158 1.2e-15 86.3 79 63.3
Gohir.A11G002600 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.2e-15 86.3 58 74.1
BraA01t04089Z Brassica rapa HOM05D007991 ORTHO05D010158 2.1e-15 85.5 53 77.4
HanXRQChr11g0334671 Helianthus annuus HOM05D007991 ORTHO05D010158 2.1e-15 85.5 55 78.2
ECA236G0423 Erigeron canadensis HOM05D007991 ORTHO05D010158 4.6e-15 84.3 61 72.1
EL10Ac4g08566 Beta vulgaris HOM05D007991 ORTHO05D010158 6.0e-15 84.0 81 56.8
FAN16G1552 Fragaria x ananassa HOM05D007991 ORTHO05D010158 6.0e-15 84.0 70 62.9
CARHR087490 Cardamine hirsuta HOM05D007991 ORTHO05D010158 7.9e-15 83.6 70 65.7
Cfa019429 Carpinus fangiana HOM05D007991 ORTHO05D010158 7.9e-15 83.6 50 80.0
BcaB04g21024 Brassica carinata HOM05D007991 ORTHO05D010158 1.3e-14 82.8 72 61.1
CANSAT80G1088 Cannabis sativa HOM05D007991 ORTHO05D010158 1.8e-14 82.4 72 61.1
Carub.0003s1230 Capsella rubella HOM05D007991 ORTHO05D010158 1.8e-14 82.4 70 65.7
Gohir.D11G002200 Gossypium hirsutum HOM05D007991 ORTHO05D010158 1.8e-14 82.4 58 70.7
Sc16g0005380 Simmondsia chinensis HOM05D007991 ORTHO05D010158 1.8e-14 82.4 76 57.9
BcaC09g48284 Brassica carinata HOM05D007991 ORTHO05D010158 2.3e-14 82.0 70 61.4
C01p52180 Brassica napus HOM05D007991 ORTHO05D010158 2.3e-14 82.0 70 61.4
BolC1t05158H Brassica oleracea HOM05D007991 ORTHO05D010158 2.3e-14 82.0 70 61.4
CiPaw.04G012700 Carya illinoinensis HOM05D007991 ORTHO05D010158 2.3e-14 82.0 77 59.7
FAN25G2658 Fragaria x ananassa HOM05D007991 ORTHO05D010158 2.3e-14 82.0 70 61.4
CSS0001388 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 3.0e-14 81.6 73 64.4
FAN11G2864 Fragaria x ananassa HOM05D007991 ORTHO05D010158 3.0e-14 81.6 70 61.4
FAN21G1902 Fragaria x ananassa HOM05D007991 ORTHO05D010158 3.0e-14 81.6 70 61.4
MBI02_g12653_MAGBIO Magnolia biondii HOM05D007991 ORTHO05D010158 5.1e-14 80.9 63 65.1
Sp3g11110 Schrenkiella parvula HOM05D007991 ORTHO05D010158 6.7e-14 80.5 70 61.4
Thhalv10022193m.g Eutrema salsugineum HOM05D007991 ORTHO05D010158 8.7e-14 80.1 72 61.1
Sed0025657 Sechium edule HOM05D007991 ORTHO05D010158 2.5e-13 78.6 70 67.1
Phvul.005G056100 Phaseolus vulgaris HOM05D007991 ORTHO05D010158 3.3e-13 78.2 75 56.0
CSS0033446 Camellia sinensis var. sinensis HOM05D007991 ORTHO05D010158 4.3e-13 77.8 51 74.5
unitig_8.g4768 Utricularia gibba HOM05D007991 ORTHO05D010158 1.6e-12 75.9 53 75.5
SalBow2G0434 Salvia bowleyana HOM05D007991 ORTHO05D010158 2.8e-12 75.1 73 57.5
Nitab4.5_0008437g0010 Nicotiana tabacum HOM05D007991 ORTHO05D010158 3.7e-12 74.7 55 70.9
Nn4g23994 Nelumbo nucifera HOM05D007991 ORTHO05D010158 4.8e-12 74.3 70 60.0
PSO675G0275 Papaver somniferum HOM05D007991 ORTHO05D010158 1.1e-11 73.2 74 55.4
MD05G1300500 Malus domestica HOM05D007991 ORTHO05D010158 2.0e-10 68.9 48 72.9
Os08g0104400 Oryza sativa ssp. japonica HOM05D007991 ORTHO05D010158 2.1e-07 58.9 54 51.9
Zm00001eb260130 Zea mays HOM05D007991 ORTHO05D010158 3.9e-06 54.7 75 44.0


User provided reference genes

Program Settings