Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 4.1e-122 441.4 224 100.0
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.0e-108 396.0 224 86.2
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.5e-100 367.5 225 81.3
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.8e-99 364.8 224 81.2
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 3.1e-98 362.1 223 79.4
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.1e-98 361.7 225 79.1
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.1e-98 361.7 225 79.1
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.6e-97 359.8 224 78.1
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 5.9e-97 357.8 224 79.9
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 7.7e-97 357.5 225 78.2
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.0e-96 357.1 225 78.2
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 2.9e-96 355.5 220 79.5
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.5e-95 353.2 223 79.4
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.9e-95 352.8 226 77.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.9e-95 352.8 226 77.4
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 2.1e-94 349.4 231 77.1
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.6e-94 348.6 219 78.5
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 4.7e-94 348.2 226 77.0
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 1.0e-93 347.1 221 78.7
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.0e-93 347.1 212 79.7
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 5.2e-93 344.7 224 76.3
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.2e-92 343.6 224 75.4
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 1.5e-92 343.2 225 76.4
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.5e-92 343.2 230 74.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 2.6e-92 342.4 225 76.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 2.6e-92 342.4 224 76.8
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 3.4e-92 342.0 226 73.9
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 3.4e-92 342.0 223 76.7
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.7e-92 341.3 224 75.9
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 5.7e-92 341.3 224 75.9
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 7.5e-92 340.9 224 75.4
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 9.8e-92 340.5 224 75.4
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 9.8e-92 340.5 224 74.6
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.3e-91 340.1 224 75.4
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 2.2e-91 339.3 218 74.3
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.2e-91 339.3 212 79.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.9e-91 338.2 224 74.1
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.9e-91 338.2 219 76.3
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 5.4e-90 334.7 219 75.3
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.0e-89 332.8 222 74.8
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.0e-88 330.5 218 72.5
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.3e-88 330.1 228 73.2
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.0e-88 328.2 229 70.7
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 5.0e-88 328.2 217 71.9
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 5.0e-88 328.2 232 68.1
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 6.6e-88 327.8 225 71.6
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.1e-87 327.0 227 70.5
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.5e-87 326.6 224 72.3
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.5e-87 326.6 221 72.4
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 4.3e-87 325.1 224 72.3
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 4.3e-87 325.1 224 72.3
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 4.3e-87 325.1 225 67.1
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.3e-87 325.1 227 73.1
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 9.5e-87 323.9 221 72.9
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.2e-86 323.6 232 67.2
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.2e-86 323.6 232 67.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.1e-86 322.8 225 73.3
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.1e-86 322.8 250 67.6
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.8e-86 322.4 226 69.5
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.8e-86 322.4 229 72.9
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 3.6e-86 322.0 227 69.2
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 3.6e-86 322.0 225 68.9
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.6e-86 322.0 218 71.6
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 4.7e-86 321.6 225 68.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 6.1e-86 321.2 225 68.9
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.1e-86 321.2 224 72.8
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 6.1e-86 321.2 227 68.3
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 8.0e-86 320.9 221 71.0
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.0e-85 320.5 229 68.6
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.0e-85 320.5 228 70.2
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-85 320.5 223 68.2
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.0e-85 320.5 225 68.9
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 225 68.4
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.8e-85 319.7 223 69.1
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 219 70.8
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.8e-85 319.7 216 69.0
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.3e-85 319.3 224 68.3
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 3.0e-85 318.9 217 72.8
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.0e-85 318.9 224 72.3
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 4.0e-85 318.5 225 70.7
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 5.2e-85 318.2 228 71.9
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 6.8e-85 317.8 225 68.0
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 6.8e-85 317.8 225 68.0
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 6.8e-85 317.8 208 69.7
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.2e-84 317.0 226 69.9
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 3.4e-84 315.5 221 69.7
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.4e-84 315.5 221 70.1
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.4e-84 315.1 224 71.9
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.2e-83 312.8 224 67.0
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 3.7e-83 312.0 224 68.8
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 1.8e-82 309.7 220 68.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 2.4e-82 309.3 224 69.2
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 7.0e-82 307.8 225 69.8
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 7.0e-82 307.8 224 67.9
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.0e-81 306.2 325 53.2
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 5.9e-81 304.7 357 49.9
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.0e-80 303.9 221 67.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 3.0e-80 302.4 227 67.0
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 5.0e-80 301.6 220 66.8
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 8.6e-80 300.8 221 67.4
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.5e-79 299.3 220 68.2
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 2.3e-77 292.7 225 67.1
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 5.2e-77 291.6 222 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 8.9e-77 290.8 218 64.2
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.0e-76 289.7 217 66.4
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 5.8e-76 288.1 308 51.3
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.3e-75 287.0 217 64.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.9e-75 285.0 218 63.8
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 8.3e-75 284.3 225 65.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.4e-74 283.5 223 61.0
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.4e-74 283.5 221 63.8
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.4e-74 282.7 219 64.4
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.0e-73 279.6 219 61.6
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.6e-73 278.5 219 63.9
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 7.8e-73 277.7 218 58.7
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 1.0e-72 277.3 221 61.1
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.3e-72 276.9 221 60.6
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.3e-72 276.9 223 62.3
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 3.0e-72 275.8 223 61.9
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 7.3e-71 271.2 219 59.8
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 8.1e-70 267.7 217 61.3
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 6.8e-69 264.6 222 62.6
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 5.8e-68 261.5 153 84.3
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 6.4e-67 258.1 172 75.6
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.6e-62 243.4 153 76.5
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 9.9e-60 234.2 152 71.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.3e-56 223.8 140 76.4
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 6.6e-56 221.5 152 67.8
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.3e-55 219.2 176 64.2
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 3.1e-53 212.6 165 66.7
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.2e-51 206.5 223 52.9
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 8.4e-51 204.5 117 82.9
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 4.2e-50 202.2 130 74.6
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 4.6e-49 198.7 122 79.5
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 6.6e-48 194.9 196 55.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 4.0e-45 185.7 107 81.3
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 4.2e-42 175.6 113 78.8
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 6.0e-41 171.8 111 71.2
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 6.0e-41 171.8 111 71.2
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 2.3e-40 169.9 99 81.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 3.0e-40 169.5 118 72.0
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-36 157.1 95 76.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 4.5e-36 155.6 121 66.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 7.9e-33 144.8 144 54.9
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.1e-31 141.0 191 36.6
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.4e-29 134.0 82 78.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.5e-28 129.0 107 64.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 4.9e-27 125.6 130 55.4
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 7.4e-23 111.7 81 69.1
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.0e-16 89.7 57 77.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.8e-13 80.5 61 65.6
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 8.5e-11 71.6 220 30.0
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 1.4e-08 64.3 48 64.6
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.1e-08 62.4 80 42.5
Dinv29042 Davidia involucrata HOM05D004698 ORTHO05D182677 8.2e-06 55.1 44 68.2


User provided reference genes

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