Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 9.7e-240 833.2 451 100.0
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 8.4e-159 564.3 467 69.8
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.2e-142 508.8 466 64.2
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.7e-141 506.1 467 64.0
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.0e-140 504.2 468 63.7
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 5.3e-121 438.7 467 57.6
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 1.0e-119 434.5 442 58.1
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.7e-119 433.7 464 56.5
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 5.0e-119 432.2 475 57.1
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-112 411.0 448 55.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.0e-112 410.2 485 53.2
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.7e-111 407.1 520 51.9
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.2e-111 406.8 447 56.2
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 5.0e-111 405.6 458 53.5
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.4e-110 404.1 444 57.2
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.5e-110 403.3 444 57.2
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 8.0e-109 398.3 444 55.9
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.1e-107 394.4 444 53.6
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 8.2e-106 388.3 422 56.2
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 4.1e-105 386.0 460 52.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 7.0e-105 385.2 444 53.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.2e-104 384.4 435 52.2
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.6e-104 383.3 452 50.9
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.3e-103 380.9 437 54.7
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 2.2e-103 380.2 448 54.9
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 3.8e-103 379.4 461 52.3
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.5e-103 378.3 452 51.3
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 9.4e-102 374.8 454 52.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.6e-101 374.0 448 52.9
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.4e-100 370.9 459 49.7
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 9.7e-99 364.8 392 57.4
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.2e-98 363.6 435 52.6
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.8e-98 363.2 488 49.2
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 8.3e-98 361.7 451 54.1
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 8.3e-98 361.7 467 52.9
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.4e-97 360.9 464 51.1
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.0e-97 358.6 413 54.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 9.1e-97 358.2 462 49.1
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.6e-96 357.5 426 53.1
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.5e-96 355.9 457 51.4
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 7.7e-96 355.1 463 50.8
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.1e-94 351.3 448 51.3
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.9e-94 350.5 446 49.6
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 2.5e-94 350.1 498 47.8
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.2e-94 348.6 415 53.5
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 4.7e-93 345.9 421 53.4
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.0e-92 344.7 452 49.3
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.2e-91 341.3 484 46.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.5e-91 340.9 448 48.7
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.4e-91 339.7 447 49.4
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.4e-91 339.7 464 49.8
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 5.7e-91 339.0 452 48.9
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.8e-90 336.7 401 52.9
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 6.3e-90 335.5 467 46.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 8.3e-90 335.1 447 48.8
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 3.1e-89 333.2 445 50.3
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 4.1e-89 332.8 459 47.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 7.0e-89 332.0 439 49.7
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.0e-88 330.5 319 58.3
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.0e-87 328.2 429 49.4
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.0e-87 328.2 470 45.3
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.3e-87 327.8 476 48.9
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.7e-87 327.4 411 51.3
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.7e-87 327.4 404 51.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 3.3e-86 323.2 461 47.3
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.3e-84 317.0 470 45.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 6.8e-84 315.5 441 47.2
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.2e-83 314.7 451 48.8
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 4.4e-83 312.8 465 46.0
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 5.7e-83 312.4 459 46.6
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 7.5e-83 312.0 397 48.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.7e-82 310.8 440 49.3
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.2e-82 310.5 440 48.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.1e-81 308.1 461 46.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.4e-81 307.0 445 47.0
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.4e-81 307.0 445 47.0
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 7.0e-81 305.4 457 46.0
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.7e-79 300.8 378 49.2
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.7e-79 300.8 465 45.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.1e-78 298.1 453 46.4
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 5.6e-78 295.8 441 45.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 8.0e-77 292.0 415 46.7
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.4e-76 291.2 475 43.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 2.3e-76 290.4 458 43.9
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.3e-76 290.4 440 44.5
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 5.4e-73 279.3 335 51.6
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.6e-72 277.7 457 43.1
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.0e-72 277.3 446 45.1
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.0e-72 277.3 352 50.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 1.0e-71 275.0 465 43.4
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 5.0e-71 272.7 494 41.5
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.5e-70 271.2 390 45.6
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 2.5e-70 270.4 475 41.9
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 3.3e-70 270.0 455 44.2
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.3e-70 270.0 474 43.5
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 7.3e-70 268.9 474 41.8
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.0e-68 263.1 460 42.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.9e-66 256.1 457 42.9
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 9.2e-65 251.9 410 45.4
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.3e-63 247.3 357 47.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-62 245.0 454 39.9
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.3e-60 237.3 344 45.1
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.6e-59 233.8 273 49.8
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 3.4e-59 233.4 410 43.4
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 3.7e-58 229.9 229 56.8
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.4e-57 228.0 452 40.5
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.4e-57 228.0 452 40.5
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.9e-57 227.6 297 49.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.6e-56 223.0 374 41.7
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.1e-54 218.4 427 39.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-54 218.0 391 41.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-53 213.0 308 48.1
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 6.8e-52 209.1 292 47.9
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 8.9e-52 208.8 203 57.1
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-51 208.4 257 51.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 2.4e-49 200.7 365 42.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 3.2e-49 200.3 442 36.7
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 2.5e-46 190.7 481 33.7
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.6e-46 189.5 295 45.1
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 3.1e-44 183.7 456 34.2
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 9.9e-43 178.7 173 55.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.3e-39 168.3 304 39.5
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.9e-39 166.8 302 39.7
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.9e-38 164.5 169 54.4
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 7.6e-35 152.5 155 55.5
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.3e-33 145.6 221 47.5
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 8.7e-31 139.0 134 57.5
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.1e-30 138.7 234 44.0
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 5.5e-25 119.8 143 50.3
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.7e-23 112.5 220 38.2
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 4.8e-21 106.7 165 47.3
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 8.2e-21 105.9 162 48.1
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 8.7e-15 85.9 84 57.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.5e-10 69.3 93 44.1
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.2e-09 67.4 182 32.4
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.2e-08 65.5 95 40.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.6e-08 65.1 93 39.8
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.9e-07 60.5 51 58.8
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.4e-06 56.2 127 35.4


User provided reference genes

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