Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.4e-104 382.9 186 100.0
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.9e-93 345.9 186 87.1
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 2.5e-93 345.5 186 86.0
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 4.3e-93 344.7 186 86.6
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 7.3e-93 344.0 186 86.6
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 9.6e-93 343.6 186 85.5
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 3.6e-92 341.7 186 84.9
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.4e-91 339.7 185 85.9
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 2.4e-91 339.0 186 84.9
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 85.5
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 4.0e-91 338.2 186 83.9
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 6.9e-91 337.4 186 83.3
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 86.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.5e-90 336.3 186 84.4
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.4
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 83.3
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 82.3
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 82.3
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 83.3
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 83.9
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 3.4e-90 335.1 184 84.8
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 83.9
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 84.9
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.3
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.3
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 83.3
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 7.6e-90 334.0 186 83.3
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 7.6e-90 334.0 186 83.3
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 7.6e-90 334.0 186 83.3
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 7.6e-90 334.0 186 82.8
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 7.6e-90 334.0 185 81.6
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 9.9e-90 333.6 185 83.2
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.3e-89 333.2 184 84.8
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 1.7e-89 332.8 185 83.8
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 83.3
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 83.9
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 84.4
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 83.9
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 83.3
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 83.3
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 3.8e-89 331.6 186 84.4
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.8e-89 331.6 186 82.3
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 3.8e-89 331.6 182 84.6
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 3.8e-89 331.6 188 81.9
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 3.8e-89 331.6 188 81.9
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 4.9e-89 331.3 185 82.2
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 6.4e-89 330.9 186 83.3
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 6.4e-89 330.9 186 83.3
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 6.4e-89 330.9 188 82.4
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.4e-88 329.7 184 83.7
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 184 83.7
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 3.2e-88 328.6 184 83.2
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 83.9
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 82.8
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 5.4e-88 327.8 186 82.3
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 9.3e-88 327.0 184 81.0
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 83.7
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 81.2
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 182 81.9
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.2e-87 326.6 182 81.9
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.6e-87 326.2 183 81.4
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 183 81.4
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 2.1e-87 325.9 184 81.5
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 2.7e-87 325.5 188 80.3
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.7e-87 325.5 186 81.2
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 2.7e-87 325.5 184 82.1
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.7e-87 325.5 186 80.6
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 3.5e-87 325.1 183 81.4
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 4.6e-87 324.7 183 80.9
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 4.6e-87 324.7 183 81.4
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 4.6e-87 324.7 186 80.6
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.9e-87 323.9 184 82.6
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.0e-86 323.6 184 81.5
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.3e-86 323.2 183 80.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.3e-86 322.4 180 80.6
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.3e-86 322.4 186 81.2
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.0e-86 322.0 184 81.0
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 3.9e-86 321.6 186 80.1
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 8.7e-86 320.5 184 79.9
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.7e-86 320.5 184 79.9
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.7e-86 320.5 184 79.9
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 80.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 80.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 80.0
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 1.1e-85 320.1 180 80.0
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 1.1e-85 320.1 178 83.1
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.1e-85 320.1 185 81.1
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 2.5e-85 318.9 180 79.4
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 3.3e-85 318.5 180 79.4
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 3.3e-85 318.5 180 79.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 3.3e-85 318.5 182 81.3
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 4.3e-85 318.2 183 82.0
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 4.3e-85 318.2 186 78.5
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 9.6e-85 317.0 178 82.6
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.3e-84 316.6 180 78.9
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.6e-84 316.2 184 78.8
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.8e-84 314.7 184 79.3
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 8.1e-84 313.9 180 77.8
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 8.1e-84 313.9 180 77.8
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 2.4e-83 312.4 186 79.0
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 6.9e-83 310.8 186 78.5
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 9.0e-83 310.5 187 79.1
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.2e-82 310.1 172 83.1
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.5e-82 309.7 186 78.0
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.0e-82 309.3 186 75.3
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.7e-81 306.2 185 77.8
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.7e-81 306.2 187 78.1
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 1.6e-79 299.7 186 75.3
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 2.7e-79 298.9 184 75.0
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 6.0e-79 297.7 181 79.6
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 6.0e-79 297.7 186 75.8
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.0e-78 295.4 186 74.7
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.5e-77 293.1 186 73.7
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.9e-77 292.7 186 73.7
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.3e-77 292.0 186 74.2
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.3e-77 292.0 186 73.1
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 4.3e-77 291.6 186 72.6
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 5.6e-77 291.2 186 73.1
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.6e-76 289.7 173 75.7
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 2.1e-71 272.7 186 67.2
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 2.7e-63 245.7 180 58.3
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 6.3e-60 234.6 180 60.6
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 6.5e-57 224.6 189 55.0
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 7.2e-56 221.1 172 64.0
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.2e-55 220.3 177 53.7
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 3.9e-54 215.3 187 54.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 4.4e-53 211.8 183 50.8
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 3.0e-46 189.1 168 52.4
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 7.0e-43 177.9 180 49.4
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 6.7e-38 161.4 89 87.6
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.0e-33 147.5 194 42.8
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 4.1e-27 125.6 90 64.4
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 9.5e-24 114.4 154 37.0
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 1.7e-20 103.6 54 85.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.8e-06 57.0 88 33.0


User provided reference genes

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