Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 4.6e-141 504.6 264 100.0
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 6.7e-100 367.9 262 77.5
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 7.7e-96 354.4 254 75.2
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 7.7e-96 354.4 248 75.0
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 1.0e-95 354.0 246 76.8
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.5e-94 349.4 254 75.6
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 1.6e-93 346.7 265 71.7
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.1e-93 346.3 265 71.3
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 4.7e-93 345.1 262 73.3
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 4.7e-93 345.1 256 72.7
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 6.1e-93 344.7 256 72.7
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 1.4e-92 343.6 256 75.0
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 3.0e-92 342.4 254 73.6
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 4.0e-92 342.0 265 72.8
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 5.2e-92 341.7 248 74.6
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.5e-91 340.1 254 74.0
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.5e-91 340.1 257 75.1
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 7.5e-91 337.8 256 70.3
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 9.8e-91 337.4 264 72.0
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.2e-90 336.3 254 74.4
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.8e-90 335.9 254 74.4
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 3.7e-90 335.5 255 72.2
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 6.3e-90 334.7 220 77.7
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 8.3e-90 334.3 262 72.1
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.1e-89 332.4 273 70.7
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 5.4e-89 331.6 271 70.8
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 5.4e-89 331.6 261 69.3
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 9.1e-89 330.9 268 68.3
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 9.1e-89 330.9 268 68.3
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.2e-88 330.5 263 70.0
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 2.7e-88 329.3 220 78.6
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 3.5e-88 328.9 248 70.6
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.5e-88 328.9 256 72.7
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 5.9e-88 328.2 257 70.0
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 5.0e-87 325.1 249 69.9
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 5.0e-87 325.1 205 80.0
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 1.1e-86 323.9 239 72.4
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.9e-86 323.2 200 81.0
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 2.5e-86 322.8 262 69.1
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 5.5e-86 321.6 260 70.4
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 7.2e-86 321.2 223 74.9
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 7.2e-86 321.2 223 74.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 7.2e-86 321.2 257 67.7
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 1.2e-85 320.5 228 73.2
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.2e-85 320.5 249 70.7
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.6e-85 320.1 214 75.7
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 2.1e-85 319.7 249 68.7
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.7e-85 319.3 223 74.4
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 3.6e-85 318.9 256 69.1
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 3.6e-85 318.9 257 68.5
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 3.6e-85 318.9 206 79.6
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 4.7e-85 318.5 253 69.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 4.7e-85 318.5 253 69.2
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 1.0e-84 317.4 257 68.1
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.0e-84 317.4 258 69.0
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 4.0e-84 315.5 256 68.4
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 8.8e-84 314.3 256 68.0
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 8.8e-84 314.3 254 71.3
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 8.8e-84 314.3 220 73.6
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 2.8e-82 309.3 244 67.6
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 2.8e-82 309.3 253 66.8
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.1e-81 307.4 259 66.8
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.7e-80 302.8 198 78.8
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.5e-80 302.4 198 71.7
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 3.5e-80 302.4 246 66.3
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.3e-79 299.7 198 77.8
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.8e-79 298.9 244 64.3
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 5.0e-79 298.5 247 66.4
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 6.6e-79 298.1 258 64.3
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 6.6e-79 298.1 198 77.8
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.9e-78 296.6 236 69.1
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 3.3e-78 295.8 260 64.6
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 4.3e-78 295.4 249 64.3
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 4.3e-78 295.4 249 64.3
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 9.5e-78 294.3 208 74.0
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.6e-77 293.5 255 67.8
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 2.8e-77 292.7 246 65.9
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 4.4e-75 285.4 268 63.1
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 4.4e-75 285.4 201 74.6
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 2.9e-74 282.7 247 64.0
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 3.5e-72 275.8 270 60.4
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 7.8e-72 274.6 266 61.7
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.0e-71 274.2 269 59.1
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.7e-71 273.5 264 61.0
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.3e-71 273.1 250 60.4
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 3.0e-71 272.7 188 71.8
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 3.0e-71 272.7 206 70.9
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 3.9e-71 272.3 269 58.4
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 8.6e-71 271.2 267 59.2
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.5e-70 270.4 264 60.6
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.5e-70 270.4 264 59.8
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.9e-70 270.0 267 59.6
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 3.3e-70 269.2 271 58.3
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 4.3e-70 268.9 270 60.4
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 1.8e-68 263.5 175 77.7
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 1.8e-68 263.5 267 59.6
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 5.8e-67 258.5 234 59.0
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 2.9e-66 256.1 264 58.3
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.4e-65 253.8 264 56.4
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 1.4e-65 253.8 262 58.0
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.9e-65 253.4 250 61.2
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.4e-65 253.1 160 82.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 5.4e-65 251.9 260 56.9
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 7.0e-65 251.5 234 58.5
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 1.3e-63 247.3 182 67.0
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 9.8e-59 231.1 211 61.1
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.7e-58 229.2 203 58.1
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.4e-57 226.5 151 78.8
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 1.7e-55 220.3 175 63.4
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 2.6e-51 206.5 261 51.3
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 9.9e-51 204.5 178 64.0
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 2.1e-32 143.7 109 71.6
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 3.8e-26 122.9 132 55.3
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 4.9e-26 122.5 97 66.0
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 8.1e-21 105.1 71 70.4
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-18 96.7 127 44.1
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.5e-17 93.6 71 63.4
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-15 87.4 80 42.5
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.5e-11 74.3 63 66.7
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 4.6e-08 62.8 112 42.0
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 6.1e-08 62.4 45 68.9
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.1e-06 58.2 94 39.4


User provided reference genes

Program Settings