Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.0e-138 494.6 277 100.0
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.0e-127 460.3 277 93.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.0e-127 458.4 277 91.3
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 91.0
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 8.9e-127 457.2 277 91.3
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-126 456.1 277 91.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 90.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.0
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 90.6
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-125 453.4 277 89.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 91.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 90.6
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 90.6
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.7e-125 451.8 277 89.9
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.7e-125 451.8 277 89.9
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.7e-125 451.8 277 89.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.7e-125 451.8 277 89.2
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 90.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 89.5
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 89.5
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 88.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.2
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 88.8
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.2
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.5
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 87.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.4
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 3.5e-123 445.3 276 90.6
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 89.9
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 87.4
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 87.7
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.1
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 89.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.8
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 87.0
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 88.1
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.7
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 88.8
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 87.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 87.7
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 87.0
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 87.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 85.9
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 87.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 87.0
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 87.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 85.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 85.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 86.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 88.1
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 6.2e-120 434.5 276 87.3
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 87.4
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.0e-119 433.7 274 85.4
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 84.8
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.0e-119 431.8 274 85.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 85.6
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 8.9e-119 430.6 278 85.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 8.9e-119 430.6 301 80.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 83.8
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.0e-118 429.5 321 78.5
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 87.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 84.8
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 5.8e-118 427.9 261 90.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.9e-117 424.9 277 84.5
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 6.4e-117 424.5 283 83.4
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 8.3e-117 424.1 275 85.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 5.4e-116 421.4 277 86.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 7.0e-116 421.0 275 84.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 7.0e-116 421.0 275 84.0
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.2e-115 420.2 280 85.0
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.7e-115 419.1 277 84.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 4.6e-115 418.3 277 80.9
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.9e-114 415.2 318 75.8
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 8.6e-114 414.1 278 82.7
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.3e-113 412.1 320 74.7
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.8e-112 409.1 261 85.4
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 6.2e-112 407.9 318 72.0
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.1e-112 407.5 261 85.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.8e-111 406.4 277 81.9
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.1e-111 405.6 274 84.3
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.2e-111 404.8 275 81.1
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.2e-110 403.7 299 73.9
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.5e-110 403.3 265 86.0
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 2.0e-110 402.9 270 83.7
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.6e-110 402.5 278 80.2
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 5.8e-110 401.4 277 80.5
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 8.3e-109 397.5 255 88.2
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.1e-108 397.1 278 79.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.4e-108 394.8 274 75.2
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 4.6e-107 391.7 273 79.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 2.3e-106 389.4 278 78.8
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.6e-106 387.9 269 77.3
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 6.6e-106 387.9 277 80.1
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 9.5e-105 384.0 355 61.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-104 382.1 260 82.3
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 4.7e-104 381.7 256 83.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.1e-103 380.6 256 80.5
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.4e-103 380.2 262 80.2
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.8e-103 379.8 282 78.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.4e-102 375.2 275 77.8
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-100 370.5 331 68.6
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.1e-100 370.5 230 88.7
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 7.8e-99 364.4 230 88.3
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.2e-96 357.1 222 90.1
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 8.1e-96 354.4 222 88.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.4e-92 341.7 278 66.2
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 9.3e-92 340.9 268 73.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.7e-90 336.7 250 78.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.7e-90 336.7 250 78.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.5e-89 333.6 277 65.7
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-88 328.9 313 64.9
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 6.2e-88 328.2 224 83.5
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.2e-86 323.9 281 66.2
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-86 323.2 274 69.0
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 2.0e-86 323.2 275 64.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-85 319.7 274 68.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.1e-83 313.2 283 64.0
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 5.3e-71 271.9 258 59.7
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 6.5e-69 265.0 187 78.6
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.6e-67 260.4 287 53.0
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 8.2e-64 248.1 285 54.4
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 9.3e-60 234.6 156 76.9
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-57 225.7 181 75.1
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-56 224.2 138 86.2
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 4.8e-56 222.2 145 84.8
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-55 220.3 129 87.6
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.5e-52 209.9 132 82.6
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.1e-47 192.6 300 44.7
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-42 177.6 97 93.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.0e-41 173.7 106 83.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.7e-40 169.5 90 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.2e-36 156.0 84 92.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.6e-35 154.1 160 60.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-29 134.0 74 91.9
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.7e-29 134.0 74 91.9
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 8.5e-29 131.7 80 82.5
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.1e-28 131.3 80 80.0
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.2e-21 107.1 258 34.5
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 4.2e-20 102.8 158 45.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 9.5e-20 101.7 158 44.3
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-18 96.7 71 87.3
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-18 96.3 123 51.2
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 8.8e-18 95.1 156 39.1
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 4.4e-17 92.8 147 38.8
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.4e-17 92.8 57 78.9
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.8e-17 91.7 71 80.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.3e-16 91.3 158 42.4
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 4.9e-16 89.4 160 38.8
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 8.3e-16 88.6 73 68.5
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.5e-14 83.2 70 67.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 155 35.5
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.8e-13 79.7 46 82.6
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-12 76.3 46 82.6
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.6e-11 73.2 43 81.4
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-11 72.8 157 38.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-11 72.8 162 35.2
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.2e-09 68.2 268 30.6
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.2e-08 63.9 140 42.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 1.2e-06 58.2 60 55.0


User provided reference genes

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