Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.3e-127 458.4 227 100.0
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 4.3e-111 404.8 229 90.0
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 7.1e-106 387.5 227 85.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.9e-103 379.4 227 83.7
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.2e-100 370.2 227 83.7
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 4.4e-100 368.2 227 80.6
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 9.3e-98 360.5 226 78.3
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.6e-97 359.8 227 80.6
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.7e-97 359.0 227 79.7
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 6.0e-97 357.8 227 79.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.3e-96 355.9 227 79.3
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.1e-95 353.6 226 77.9
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 3.3e-95 352.1 227 79.7
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.6e-95 351.3 227 77.1
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.3e-94 350.1 229 77.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.6e-94 349.7 227 77.1
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.8e-94 349.0 229 76.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 4.8e-94 348.2 228 77.2
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.8e-94 348.2 228 77.2
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.8e-94 348.2 229 76.9
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.8e-94 348.2 229 76.9
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 8.1e-94 347.4 229 76.0
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.4e-93 345.9 228 76.8
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.1e-93 345.5 228 76.8
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.0e-93 345.1 228 76.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 5.3e-93 344.7 228 77.6
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 2.0e-92 342.8 228 78.1
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.4e-92 342.0 227 74.9
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.4e-92 341.7 227 77.1
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.2e-91 339.3 227 76.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 8.4e-91 337.4 228 76.3
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.3e-90 334.0 227 73.6
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.3e-88 330.1 230 74.8
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.3e-88 330.1 222 74.3
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.3e-87 325.1 229 74.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 5.6e-87 324.7 227 70.9
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 9.6e-87 323.9 227 70.5
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 2.8e-86 322.4 227 73.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.6e-86 322.0 227 74.4
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.1e-85 320.5 227 73.6
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.8e-85 319.7 228 70.6
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.4e-85 319.3 228 74.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.7e-83 313.2 230 70.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.2e-83 312.8 227 71.8
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.9e-83 311.6 230 68.3
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 6.4e-83 311.2 234 69.2
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.4e-82 309.3 227 69.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.7e-81 305.8 233 69.5
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.5e-81 305.4 236 67.8
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.0e-80 303.9 222 66.7
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.0e-80 303.9 230 67.0
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.3e-80 303.5 232 69.4
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.0e-80 302.4 228 71.1
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 3.9e-80 302.0 227 67.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.9e-79 299.7 228 70.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.5e-79 299.3 228 70.6
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.3e-79 298.5 233 65.7
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.3e-78 297.0 228 66.2
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.8e-78 295.8 220 65.9
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 6.2e-78 294.7 231 64.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.1e-77 292.4 230 66.5
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.1e-77 292.4 227 67.8
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.0e-76 289.7 232 64.7
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 4.5e-76 288.5 230 64.3
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.8e-76 288.1 228 65.8
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 7.6e-76 287.7 227 65.2
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.0e-75 287.3 227 65.2
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 8.4e-75 284.3 230 64.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 8.4e-75 284.3 227 64.8
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.1e-74 283.9 224 67.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.1e-74 283.9 228 66.7
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.1e-74 283.9 231 64.9
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 9.3e-74 280.8 227 63.9
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.6e-73 280.0 219 66.2
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.1e-73 279.6 227 64.8
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.7e-73 279.3 227 63.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.9e-73 277.7 228 65.4
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.0e-72 277.3 219 66.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.0e-72 277.3 219 64.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-72 276.9 230 64.3
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.8e-72 276.6 169 79.3
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.3e-72 276.2 230 66.1
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 6.7e-72 274.6 227 62.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.5e-71 273.5 230 63.5
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.9e-71 273.1 228 63.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.3e-71 272.3 219 66.7
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 3.3e-71 272.3 229 62.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.7e-71 271.6 228 62.7
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 9.6e-71 270.8 224 61.6
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.6e-71 270.8 244 57.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.3e-70 270.4 229 61.6
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 8.2e-70 267.7 222 63.1
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.1e-69 267.3 222 63.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 1.4e-69 266.9 226 60.6
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.4e-69 266.2 230 60.9
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.9e-69 264.6 221 62.9
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 9.0e-69 264.2 222 61.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.6e-68 262.7 189 72.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.5e-68 261.9 230 60.9
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.3e-67 260.4 222 61.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.9e-67 259.2 219 60.3
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.9e-66 256.5 221 59.7
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.5e-66 256.1 227 63.4
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 7.1e-66 254.6 227 59.9
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 7.1e-66 254.6 229 55.9
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 9.3e-66 254.2 227 59.9
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 9.3e-66 254.2 227 59.5
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 9.3e-66 254.2 227 59.9
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 9.3e-66 254.2 228 61.8
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 9.3e-66 254.2 228 61.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-65 252.3 228 61.0
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 6.1e-65 251.5 219 62.6
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 5.1e-64 248.4 187 68.4
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 5.1e-64 248.4 227 60.4
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.1e-63 247.3 228 59.2
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 4.3e-63 245.4 241 56.0
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 7.4e-63 244.6 259 56.4
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.6e-62 243.4 227 59.0
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-62 243.0 227 59.0
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 2.8e-62 242.7 222 57.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.8e-62 242.7 221 57.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 6.3e-62 241.5 228 57.5
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.2e-62 241.1 224 54.0
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 8.2e-62 241.1 227 61.2
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-60 236.9 227 58.6
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.6e-60 236.1 148 74.3
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.4e-60 235.7 230 57.8
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 5.9e-60 235.0 238 56.3
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.7e-59 233.4 230 54.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 8.5e-59 231.1 249 53.8
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.4e-58 230.3 238 55.0
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 5.5e-58 228.4 204 59.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.6e-57 225.7 215 52.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 4.6e-57 225.3 221 52.0
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 7.9e-57 224.6 219 55.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.0e-56 224.2 227 55.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.0e-56 224.2 205 60.0
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 8.8e-56 221.1 228 55.7
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.3e-55 219.2 178 63.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 9.7e-55 217.6 228 52.6
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 2.2e-54 216.5 186 57.0
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.8e-54 216.1 220 50.9
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 6.3e-54 214.9 220 51.4
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.4e-53 213.0 204 54.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.9e-53 211.5 220 50.9
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.9e-53 211.5 206 54.4
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.5e-52 210.3 226 50.0
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.4e-52 209.1 220 50.0
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.3e-51 207.2 220 51.4
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-51 206.8 222 50.5
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.9e-50 203.4 169 58.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 3.9e-48 195.7 230 48.3
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 5.1e-48 195.3 195 52.3
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 6.7e-48 194.9 186 54.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-47 194.1 229 52.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.8e-46 188.7 226 45.6
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 1.1e-45 187.6 222 47.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.4e-45 187.2 165 62.4
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.8e-45 186.8 139 59.0
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 5.3e-45 185.3 143 59.4
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.2e-44 184.1 229 45.0
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.0e-44 183.3 222 46.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.5e-44 182.6 229 51.5
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.0e-43 181.0 279 43.0
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.2e-43 179.9 167 53.9
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 4.2e-42 175.6 123 68.3
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.3e-38 164.1 132 61.4
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.7e-38 163.7 106 67.9
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 8.2e-38 161.4 216 47.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 7.0e-37 158.3 197 45.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-36 155.6 232 44.8
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.5e-36 155.6 232 44.8
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 5.9e-36 155.2 227 44.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.8e-32 141.7 82 81.7
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.5e-31 138.3 88 73.9
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.1e-26 124.4 117 63.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.9e-22 109.0 84 65.5
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 9.5e-18 94.7 54 77.8
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.6e-15 86.7 52 75.0
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 3.1e-08 63.2 136 35.3
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 8.3e-06 55.1 134 28.4
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 8.3e-06 55.1 142 30.3


User provided reference genes

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