Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.7e-257 891.7 522 100.0
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.0e-167 593.2 530 67.9
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 4.5e-140 502.3 517 60.3
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 8.0e-137 491.5 520 59.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 5.7e-135 485.3 517 58.2
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.1e-133 481.1 524 57.8
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 9.1e-133 478.0 524 57.6
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.5e-132 475.7 528 58.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 9.5e-130 468.0 529 55.6
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 1.2e-129 467.6 529 55.6
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.3e-128 463.4 521 55.5
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.2e-124 451.1 504 56.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 8.6e-123 444.9 522 55.2
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 3.6e-121 439.5 513 54.2
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 6.0e-116 422.2 524 55.0
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 2.3e-115 420.2 528 52.7
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 6.6e-115 418.7 529 53.1
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.3e-114 416.4 523 51.8
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.1e-109 401.4 513 52.6
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.9e-109 400.6 522 52.9
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.2e-108 397.9 535 49.0
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.6e-108 397.5 551 49.2
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.0e-108 395.6 514 54.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.7e-107 394.0 527 51.6
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 3.0e-107 393.3 528 48.9
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.9e-107 392.9 524 51.3
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.3e-106 389.8 524 51.0
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.6e-105 387.5 528 50.8
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 2.8e-105 386.7 524 51.9
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.6e-105 386.3 411 58.9
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.2e-105 385.6 510 51.4
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 8.1e-105 385.2 497 49.9
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.4e-104 384.4 515 47.6
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 4.4e-103 379.4 523 49.5
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.7e-102 377.5 504 47.6
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.9e-102 376.7 528 49.1
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.4e-102 375.6 526 50.8
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.4e-101 372.5 547 48.1
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.3e-99 367.1 503 48.9
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 8.6e-99 365.2 526 51.0
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 8.1e-97 358.6 517 46.4
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.2e-96 355.9 576 47.0
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 3.2e-93 346.7 534 48.3
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 7.1e-93 345.5 520 46.9
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 7.1e-93 345.5 466 53.9
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.3e-91 341.3 517 48.2
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.9e-91 339.7 513 44.1
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.5e-90 337.0 474 49.4
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 7.3e-90 335.5 471 48.2
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.1e-89 334.0 390 54.4
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 2.8e-89 333.6 535 47.1
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 6.9e-88 328.9 520 46.3
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 3.4e-87 326.6 471 47.3
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 3.4e-87 326.6 471 47.3
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 6.4e-86 322.4 514 43.6
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 6.4e-86 322.4 498 45.8
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.9e-85 320.9 536 44.0
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.2e-84 318.2 580 42.9
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.1e-82 311.6 517 44.1
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.5e-82 311.2 586 42.8
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 2.1e-81 307.4 369 55.3
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.1e-80 305.1 519 46.4
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 6.9e-80 302.4 611 41.6
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.2e-79 301.6 414 49.8
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 7.6e-79 298.9 509 42.6
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.9e-77 294.3 533 41.3
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 9.3e-77 292.0 511 42.7
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.2e-76 291.6 583 38.8
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 7.9e-76 288.9 427 45.0
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.3e-75 288.1 458 45.4
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.8e-75 287.7 532 40.2
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 3.9e-75 286.6 514 39.7
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 8.7e-75 285.4 399 51.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.9e-74 284.3 531 40.3
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.6e-73 281.2 511 39.5
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 3.7e-73 280.0 598 41.1
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 3.7e-73 280.0 507 40.6
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 6.2e-73 279.3 428 45.8
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 8.1e-73 278.9 406 46.3
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.6e-71 273.9 429 45.2
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.6e-71 272.3 485 43.1
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.2e-68 265.0 397 47.1
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 6.7e-67 259.2 522 39.8
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.1e-65 254.2 379 47.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.8e-65 253.8 309 56.0
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.8e-64 251.1 580 37.1
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 3.1e-64 250.4 526 39.7
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 2.2e-62 244.2 436 41.3
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.2e-62 244.2 412 46.1
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 4.2e-61 240.0 520 40.2
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 5.5e-61 239.6 525 42.1
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 7.1e-61 239.2 527 38.7
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 9.3e-61 238.8 530 38.3
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.7e-60 237.3 503 38.4
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 4.6e-60 236.5 524 39.1
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.9e-58 231.1 488 38.3
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 6.3e-57 226.1 635 35.6
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.1e-56 223.4 500 36.6
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.7e-55 219.2 521 36.7
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 2.5e-53 214.2 503 39.4
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 4.2e-53 213.4 530 35.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 5.5e-53 213.0 504 38.1
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 5.5e-53 213.0 485 36.3
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 9.4e-53 212.2 504 39.1
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.5e-50 204.9 489 37.8
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 2.0e-50 204.5 565 32.7
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 2.5e-50 204.1 516 33.7
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.3e-49 201.8 508 37.6
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.7e-49 201.4 303 43.9
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 2.8e-49 200.7 518 35.7
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.2e-47 195.3 478 34.7
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 4.5e-47 193.4 516 38.6
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.3e-46 191.8 541 32.2
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.9e-46 190.7 505 36.4
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 5.1e-43 179.9 473 34.0
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.1e-42 178.7 486 36.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 1.5e-42 178.3 485 35.9
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 1.3e-41 175.3 505 35.2
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-40 172.2 489 36.2
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 2.4e-40 171.0 505 35.6
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 2.4e-40 171.0 489 36.2
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.5e-38 162.9 290 45.5
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.9e-37 161.4 355 36.1
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 5.5e-37 159.8 334 41.6
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.2e-36 158.7 190 56.3
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 1.2e-36 158.7 341 38.1
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 2.7e-36 157.5 310 45.2
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 2.2e-33 147.9 304 40.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 4.8e-33 146.7 393 35.4
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.7e-28 130.2 130 54.6
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 5.2e-27 126.7 297 35.0
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.8e-24 118.2 222 38.3
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.1e-24 117.5 273 39.2
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 9.1e-24 115.9 150 52.0
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 1.3e-22 112.1 123 56.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 4.2e-21 107.1 249 33.7
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 6.3e-17 93.2 72 62.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.4e-16 92.0 183 32.8
QL10p038631 Quercus lobata HOM05D001846 ORTHO05D005785 1.1e-13 82.4 95 51.6
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.7e-09 67.4 334 26.6
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.1e-08 65.9 68 50.0
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 1.7e-06 58.5 318 26.7
MSTRG.18434 Avicennia marina HOM05D001846 ORTHO05D005785 2.3e-06 58.2 221 28.5
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.9e-06 57.8 82 47.6


User provided reference genes

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