Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1947.2 957 100.0
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1474.1 946 74.5
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1465.3 952 73.1
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1401.0 947 70.7
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1386.7 948 71.0
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1366.3 924 71.6
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1361.3 948 69.1
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1352.4 949 68.7
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1340.5 944 67.8
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1323.1 953 67.1
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1319.3 941 67.8
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1315.4 952 66.5
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1314.3 919 69.0
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1313.5 957 65.8
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1309.7 953 65.9
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1307.4 953 66.0
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1301.2 949 66.5
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1300.4 944 66.5
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1284.6 975 64.3
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1284.2 941 66.5
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1281.2 941 66.4
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1279.6 955 64.4
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1246.1 951 64.9
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1244.6 945 65.1
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1244.2 927 63.3
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1241.9 1002 61.4
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1233.0 846 69.5
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1225.7 817 72.0
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1221.5 948 61.9
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1213.7 948 61.7
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1203.3 948 61.3
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1187.9 946 61.5
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1182.9 942 61.8
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1182.5 946 60.7
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1178.7 948 59.7
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 0.0e+00 1177.5 891 63.7
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1172.9 950 61.1
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1169.8 870 64.1
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1161.7 948 60.3
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1159.8 951 59.8
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1152.9 951 59.6
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1148.7 928 59.1
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1136.7 956 59.1
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 0.0e+00 1134.0 944 58.4
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 0.0e+00 1131.3 953 59.3
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 0.0e+00 1130.5 948 58.9
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1128.6 866 62.7
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1124.0 925 58.6
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1114.4 944 63.1
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 0.0e+00 1114.0 712 73.9
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1113.6 925 59.6
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1111.3 910 60.8
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 0.0e+00 1106.3 957 57.7
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 0.0e+00 1104.0 954 57.8
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 0.0e+00 1100.9 957 58.3
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1099.0 795 65.2
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 0.0e+00 1094.7 931 58.3
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 0.0e+00 1094.3 955 57.3
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1090.9 923 57.2
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 0.0e+00 1089.7 945 56.7
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1080.9 956 56.5
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 0.0e+00 1078.5 932 58.3
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 0.0e+00 1075.8 747 68.4
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 3.3e-311 1071.6 928 57.7
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 8.2e-305 1050.4 949 55.8
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 8.2e-305 1050.4 930 54.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.1e-304 1050.0 910 57.4
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.8e-304 1049.3 953 55.5
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 5.3e-304 1047.7 950 55.9
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 2.0e-303 1045.8 927 55.8
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 6.5e-302 1040.8 918 55.1
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.9e-299 1031.6 876 58.3
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 8.8e-299 1030.4 819 60.3
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 8.8e-299 1030.4 819 60.3
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.0e-294 1016.9 746 65.7
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 5.0e-294 1014.6 913 54.1
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.7e-289 998.4 844 59.6
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.1e-282 976.9 956 52.9
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.8e-281 972.2 974 52.0
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.6e-279 966.5 915 54.0
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.8e-275 953.0 817 57.5
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 3.0e-275 952.2 723 64.0
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 6.8e-275 951.0 933 52.1
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 7.0e-272 941.0 635 69.1
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 1.2e-271 940.3 905 51.5
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.2e-271 940.3 816 58.6
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 2.9e-270 935.6 942 51.0
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 8.9e-259 897.5 904 50.6
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.3e-253 879.0 626 66.6
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.8e-206 723.8 647 54.4
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.5e-205 719.9 488 67.4
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 8.7e-198 694.9 861 41.9
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 9.3e-192 674.9 580 54.7
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.4e-184 651.0 573 57.4
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.3e-181 639.8 432 68.8
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 5.9e-170 602.4 472 63.8
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.7e-159 567.0 542 52.6
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 3.4e-149 533.5 512 53.3
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 7.3e-136 489.2 411 61.1
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 2.8e-135 487.3 379 61.5
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 2.5e-128 464.2 1018 31.5
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.9e-100 370.9 307 58.6
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.5e-98 364.0 293 65.2
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 4.2e-83 313.9 257 63.8
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 6.7e-81 306.6 282 56.0
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.0e-68 266.2 293 49.1
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 2.2e-63 248.4 313 41.2
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.8e-63 248.1 206 56.3
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.1e-54 218.0 282 45.0
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 1.3e-36 159.5 105 77.1
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 5.0e-36 157.5 134 59.7
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 8.6e-36 156.8 158 53.8
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 8.6e-36 156.8 158 53.8
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 8.3e-31 140.2 102 58.8
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.1e-26 125.6 100 61.0
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.0e-25 123.2 210 37.6
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 1.9e-19 102.4 111 50.5
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.8e-17 95.9 98 49.0
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 6.4e-15 87.4 85 55.3
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 3.5e-13 81.6 270 27.0
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.9e-12 78.2 62 58.1
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 2.1e-10 72.4 61 52.5
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.6e-10 71.6 53 56.6


User provided reference genes

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