Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 1.6e-61 239.2 114 100.0
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 3.0e-28 128.6 88 70.5
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 1.1e-27 126.7 78 79.5
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 1.5e-27 126.3 71 87.3
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.9e-27 125.9 78 78.2
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 2.5e-27 125.6 79 75.9
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 4.3e-27 124.8 72 81.9
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 4.3e-27 124.8 71 87.3
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 5.6e-27 124.4 84 72.6
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 5.6e-27 124.4 84 72.6
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 5.6e-27 124.4 102 64.7
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.6e-26 122.9 78 78.2
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 2.8e-26 122.1 82 73.2
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 6.2e-26 120.9 82 72.0
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 8.1e-26 120.6 72 79.2
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 2.4e-25 119.0 67 83.6
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 3.1e-25 118.6 72 77.8
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 6.9e-25 117.5 72 76.4
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 6.9e-25 117.5 72 79.2
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 8.9e-25 117.1 72 75.0
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 1.2e-24 116.7 89 62.9
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 1.5e-24 116.3 72 76.4
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 2.0e-24 115.9 71 77.5
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 2.6e-24 115.5 82 70.7
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 7.6e-24 114.0 72 75.0
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 7.6e-24 114.0 74 73.0
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 7.6e-24 114.0 72 76.4
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 1.3e-23 113.2 65 80.0
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 1.7e-23 112.8 74 71.6
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 2.9e-23 112.1 71 74.6
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 8.4e-23 110.5 76 67.1
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 1.1e-22 110.2 72 69.4
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 1.4e-22 109.8 71 73.2
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 1.4e-22 109.8 71 73.2
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 1.4e-22 109.8 71 73.2
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.9e-22 109.4 71 71.8
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 2.4e-22 109.0 70 72.9
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 2.4e-22 109.0 72 72.2
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 4.2e-22 108.2 82 65.9
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 5.4e-22 107.8 71 70.4
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 5.4e-22 107.8 72 70.8
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 9.3e-22 107.1 72 72.2
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 1.2e-21 106.7 76 69.7
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.2e-21 106.7 89 62.9
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 1.6e-21 106.3 72 73.6
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.6e-21 106.3 71 77.5
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.1e-21 105.9 76 69.7
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 2.1e-21 105.9 76 69.7
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 2.7e-21 105.5 80 66.2
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 3.5e-21 105.1 72 69.4
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 4.6e-21 104.8 73 67.1
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 6.0e-21 104.4 72 69.4
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 7.8e-21 104.0 73 65.8
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 1.0e-20 103.6 73 67.1
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 2.3e-20 102.4 72 68.1
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 3.0e-20 102.1 73 64.4
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 3.9e-20 101.7 73 65.8
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 3.9e-20 101.7 73 65.8
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 3.9e-20 101.7 73 64.4
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 3.9e-20 101.7 75 64.0
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 1.1e-19 100.1 72 63.9
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 1.5e-19 99.8 72 63.9
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 1.5e-19 99.8 72 63.9
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 1.9e-19 99.4 73 64.4
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 2.5e-19 99.0 57 84.2
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 3.3e-19 98.6 67 65.7
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 4.3e-19 98.2 56 83.9
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 4.3e-19 98.2 56 83.9
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 4.3e-19 98.2 73 63.0
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 4.8e-18 94.7 66 68.2
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 6.2e-18 94.4 73 61.6
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 1.8e-17 92.8 63 73.0
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 2.4e-17 92.4 69 68.1
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 5.3e-17 91.3 76 60.5
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 2.2e-15 85.9 71 60.6
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 2.2e-15 85.9 67 59.7
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 7.1e-14 80.9 72 55.6
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 1.1e-11 73.6 71 50.7
TWI34G0772 Tripterygium wilfordii HOM05D007721 ORTHO05D009811 2.4e-09 65.9 56 57.1
HanXRQChr04g0118971 Helianthus annuus HOM05D007721 ORTHO05D009811 9.9e-08 60.5 66 47.0
SGA_v2.0_scaffold114G31816 Striga asiatica HOM05D007721 ORTHO05D009811 2.2e-07 59.3 77 44.2
Gohir.D07G127200 Gossypium hirsutum HOM05D007721 ORTHO05D009811 2.9e-07 58.9 47 55.3
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 6.4e-07 57.8 46 63.0
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 1.4e-06 56.6 45 53.3
arahy.Tifrunner.gnm1.ann1.K7RUU1 Arachis hypogaea HOM05D007721 ORTHO05D009811 7.1e-06 54.3 29 79.3
DCAR_024676 Daucus carota HOM05D007721 ORTHO05D009811 9.3e-06 53.9 57 49.1


User provided reference genes

Program Settings