Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.9e-171 605.1 310 100.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 3.9e-155 551.6 310 91.9
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.9e-85 320.1 330 54.8
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.5e-85 319.7 325 55.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.8e-83 313.5 316 57.6
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.0e-82 310.1 316 54.7
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.7e-82 308.5 311 55.3
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 6.3e-81 305.1 319 54.5
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 2.0e-79 300.1 313 55.3
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 3.5e-79 299.3 312 55.1
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 4.5e-79 298.9 317 55.2
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.9e-79 298.5 312 54.2
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.7e-78 297.0 311 54.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.7e-78 297.0 312 54.2
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.7e-78 297.0 312 54.2
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-77 293.9 303 54.1
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.5e-77 292.0 320 52.2
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 4.0e-75 285.8 314 51.9
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 3.3e-74 282.7 311 50.2
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 9.7e-74 281.2 317 51.1
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.7e-73 280.4 322 50.0
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 2.8e-73 279.6 313 52.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 2.8e-73 279.6 312 51.9
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 5.9e-71 271.9 290 54.8
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.9e-70 269.6 307 50.8
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 5.0e-70 268.9 319 49.2
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 4.2e-69 265.8 354 47.2
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 5.5e-69 265.4 314 50.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.2e-68 264.2 290 53.1
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.4e-67 260.8 316 50.9
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.2e-66 257.7 311 49.8
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 3.4e-66 256.1 307 48.2
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 9.8e-66 254.6 309 49.8
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 6.3e-65 251.9 317 47.6
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.4e-64 250.0 319 48.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 3.5e-63 246.1 307 45.6
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.3e-62 244.2 308 48.7
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 3.8e-62 242.7 316 46.8
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.9e-61 240.4 308 46.1
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.9e-61 240.4 313 45.4
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 9.5e-61 238.0 312 44.9
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 9.5e-61 238.0 312 46.5
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 9.5e-61 238.0 312 43.9
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.2e-60 237.7 315 46.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 2.8e-60 236.5 310 43.5
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.4e-59 234.2 316 45.6
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 4.0e-59 232.6 306 46.7
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 5.2e-59 232.3 318 45.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.2e-59 232.3 318 45.3
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 8.9e-59 231.5 374 41.4
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.2e-58 231.1 309 46.0
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.0e-58 230.3 319 43.9
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.6e-58 229.9 316 44.3
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 2.6e-58 229.9 311 45.7
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 7.5e-58 228.4 308 45.1
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.3e-57 227.6 324 44.4
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.7e-57 227.3 311 43.4
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.2e-57 226.9 318 44.3
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.2e-57 226.9 314 45.5
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.2e-57 226.9 339 44.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 2.8e-57 226.5 323 42.7
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.9e-57 225.7 313 43.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 4.9e-57 225.7 318 44.3
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 6.3e-57 225.3 308 44.5
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 8.3e-57 224.9 314 43.3
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 8.3e-57 224.9 335 41.5
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.1e-56 224.6 318 45.6
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 4.1e-56 222.6 315 44.8
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 7.0e-56 221.9 313 44.1
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.6e-55 220.7 321 43.3
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 3.5e-55 219.5 315 41.3
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 4.5e-55 219.2 317 44.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 4.5e-55 219.2 350 41.4
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 5.9e-55 218.8 311 42.4
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.0e-54 218.0 342 43.0
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.7e-54 217.2 313 41.9
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 2.3e-54 216.9 329 41.3
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 2.3e-54 216.9 294 43.5
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 3.8e-54 216.1 312 41.7
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.0e-54 215.7 315 42.5
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 5.0e-54 215.7 343 42.0
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 8.6e-54 214.9 310 42.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.1e-53 214.5 316 42.7
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 2.5e-53 213.4 314 42.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 2.5e-53 213.4 310 43.9
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.6e-53 212.2 295 44.4
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 6.8e-51 205.3 312 42.3
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.5e-50 204.1 367 39.5
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 4.4e-50 202.6 332 39.5
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 9.8e-50 201.4 318 40.9
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.7e-49 200.7 342 41.2
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.2e-49 200.3 294 41.2
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 6.4e-49 198.7 408 37.0
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 8.3e-49 198.4 306 41.8
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 8.3e-49 198.4 306 41.8
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.4e-48 197.6 306 41.5
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 9.2e-48 194.9 293 42.7
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.0e-47 193.7 224 50.0
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 1.0e-46 191.4 307 40.7
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 3.0e-46 189.9 306 41.5
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 3.3e-45 186.4 306 39.5
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 7.3e-45 185.3 321 37.7
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.2e-44 184.5 329 38.6
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.7e-44 182.6 315 40.3
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 5.2e-43 179.1 307 39.4
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-42 177.6 227 48.9
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 5.8e-42 175.6 318 38.7
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 7.5e-42 175.3 308 38.3
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.3e-41 174.5 314 38.9
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 8.3e-41 171.8 322 35.4
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 7.8e-39 165.2 224 46.4
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.0e-38 164.9 307 34.5
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 3.3e-37 159.8 322 35.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.4e-35 154.5 219 39.3
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 2.5e-29 133.7 221 38.9
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 5.6e-29 132.5 235 40.4
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 9.5e-29 131.7 230 38.3
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.6e-28 129.8 312 32.4
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.6e-28 129.8 226 41.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 8.1e-28 128.6 247 36.8
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 2.4e-24 117.1 86 58.1
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 3.5e-23 113.2 303 28.4
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 7.8e-23 112.1 257 31.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 2.3e-22 110.5 189 36.0
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 5.6e-21 105.9 249 34.1
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.2e-20 104.8 341 25.8
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.1e-20 104.0 89 55.1
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.7e-20 102.8 209 36.8
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 4.0e-19 99.8 231 33.3
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.2e-18 98.2 72 69.4
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 9.9e-18 95.1 144 43.1
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 8.4e-17 92.0 107 45.8
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 2.4e-16 90.5 114 41.2
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 9.3e-16 88.6 88 52.3
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.1e-15 87.4 55 69.1
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.3e-14 84.7 333 25.5
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 1.1e-13 81.6 101 39.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.5e-13 81.3 351 23.4
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 8.1e-12 75.5 269 30.9
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 1.8e-11 74.3 188 34.6
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 9.9e-10 68.6 321 24.6
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 8.4e-09 65.5 75 46.7
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 2.1e-07 60.8 81 39.5
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 1.8e-06 57.8 129 31.0
FAN03G0395 Fragaria x ananassa HOM05D021264 ORTHO05D022594 5.1e-06 56.2 139 29.5
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 8.7e-06 55.5 70 48.6


User provided reference genes

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