Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 0.0e+00 1888.6 1199 100.0
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 0.0e+00 1103.6 999 69.7
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.3e-243 847.4 1209 54.0
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.9e-235 819.7 1222 50.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 2.9e-227 793.1 1243 51.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 7.0e-221 771.9 1262 48.4
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.0e-220 770.4 1008 52.7
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 2.3e-219 766.9 1245 49.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 6.6e-219 765.4 1211 44.8
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.1e-216 758.1 1255 51.1
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-216 757.3 1238 48.9
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 3.1e-216 756.5 1252 49.1
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-214 751.1 1234 46.4
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.3e-210 736.5 1238 46.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.6e-209 734.2 1223 47.1
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.7e-206 724.2 1265 48.1
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.2e-204 718.0 1253 48.3
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.3e-203 714.5 1226 49.4
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 6.6e-203 712.2 1258 46.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.2e-201 708.0 1232 48.9
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 4.0e-200 703.0 1314 45.4
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.9e-198 696.0 1249 46.1
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.8e-192 677.6 1252 48.3
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.2e-191 674.9 1269 47.8
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.4e-190 668.7 1235 48.8
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.1e-185 654.1 1248 46.6
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.4e-184 651.4 1233 45.1
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.9e-181 641.0 1233 45.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 2.1e-177 627.5 1257 46.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 6.9e-176 622.5 808 47.0
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.3e-169 601.7 1055 41.5
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 5.5e-165 586.3 1247 45.7
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 4.3e-162 576.6 1242 39.9
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.6e-161 574.7 1240 45.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-160 572.0 1247 45.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-159 568.2 1247 45.1
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.1e-156 557.8 1206 42.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 6.1e-156 556.2 1206 41.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.8e-155 554.7 1234 39.0
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.7e-155 552.7 1246 43.5
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.8e-153 546.6 1247 43.5
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 2.4e-152 544.3 1250 41.9
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.8e-150 537.0 1243 44.7
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 6.1e-148 529.6 1269 39.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.8e-147 528.1 1207 41.9
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.0e-146 524.6 1247 36.3
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.0e-146 524.6 1339 39.5
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.7e-146 522.3 1245 43.4
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 4.8e-145 520.0 1217 37.1
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 2.4e-144 517.7 1229 38.4
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 7.7e-143 512.7 1222 40.2
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.9e-141 508.1 1263 38.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.1e-140 504.6 1296 35.8
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 3.0e-139 500.7 1296 37.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 6.3e-137 493.0 1213 39.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.7e-134 485.0 1128 42.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.9e-133 481.5 1208 38.0
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 3.0e-131 474.2 1207 40.3
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 9.8e-130 469.2 1212 39.3
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 2.8e-129 467.6 1215 37.0
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.3e-126 458.8 1116 37.7
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 6.5e-126 456.4 1237 35.2
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.4e-114 417.5 1251 33.9
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 3.7e-113 414.1 1050 42.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.4e-112 412.1 1117 36.3
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.8e-112 411.8 810 35.6
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.5e-111 407.5 1064 38.3
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 5.9e-111 406.8 491 46.8
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 5.9e-111 406.8 1250 32.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 8.6e-110 402.9 1240 37.6
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.0e-107 396.0 1221 38.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.1e-107 394.4 1283 34.3
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.8e-106 389.4 1358 34.2
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.4e-104 384.8 810 34.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.4e-104 383.6 1274 35.9
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.0e-102 379.4 1270 35.6
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.6e-102 376.7 989 37.8
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.1e-101 375.9 1226 34.8
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.6e-100 372.1 832 35.2
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 8.1e-100 369.8 1261 35.0
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 4.9e-97 360.5 1262 34.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 8.3e-97 359.8 1295 34.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 6.0e-95 353.6 1270 34.8
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 8.6e-94 349.7 1090 39.5
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.0e-91 340.9 658 35.3
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 6.8e-91 340.1 1314 30.9
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 5.8e-90 337.0 1229 35.7
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.4e-88 331.6 746 33.0
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 9.2e-88 329.7 822 32.8
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.6e-87 328.9 1043 37.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.5e-85 322.4 1372 32.7
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.4e-83 315.8 1346 31.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.8e-81 307.8 1033 33.8
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 5.4e-80 303.9 1165 33.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 7.1e-80 303.5 1296 34.0
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.0e-78 299.7 615 35.4
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 6.6e-78 297.0 722 33.5
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 6.6e-78 297.0 618 36.7
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.5e-77 295.8 1328 33.1
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-77 295.8 829 30.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.9e-77 295.4 497 39.2
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.9e-77 295.4 1280 33.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 8.1e-76 290.0 671 32.9
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.1e-75 289.7 1036 29.6
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.3e-75 287.3 788 31.5
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.3e-75 287.3 660 35.0
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.6e-74 285.0 817 30.4
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 5.8e-74 283.9 793 32.7
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-73 282.7 841 29.8
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 9.3e-72 276.6 1061 31.1
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.3e-72 276.6 604 33.6
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 9.3e-72 276.6 1036 29.0
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.3e-70 272.7 1374 31.4
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.3e-70 271.9 1090 32.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.6e-69 267.3 1222 32.8
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 6.2e-68 263.8 1337 30.5
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 4.0e-67 261.2 832 30.0
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.5e-66 259.2 908 29.3
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.5e-66 257.7 1000 35.0
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 7.6e-66 256.9 1223 31.2
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.7e-65 255.8 1235 30.9
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 6.4e-65 253.8 526 35.7
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 9.3e-64 250.0 1465 29.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-63 249.6 1296 26.6
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.3e-62 246.1 1216 33.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-62 245.7 1296 29.4
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.5e-61 241.9 1384 27.7
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.8e-60 238.4 1083 32.5
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.8e-59 235.7 1363 30.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.8e-59 235.7 1363 30.8
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.6e-58 230.3 606 32.5
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-51 209.9 505 33.5
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 9.0e-51 206.8 825 28.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.6e-47 196.1 1395 26.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 8.7e-46 190.3 1195 30.5
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.7e-45 186.8 490 32.4
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 5.0e-41 174.5 667 26.2
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.2e-40 171.8 850 28.6
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 8.8e-38 163.7 1179 28.2
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.7e-36 159.5 698 28.2
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.0e-34 152.5 602 26.7
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.2e-33 149.1 654 25.8
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 8.5e-33 147.1 612 25.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.6e-31 142.9 929 32.5
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-30 139.8 437 30.7
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 5.2e-30 137.9 451 28.8
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-28 132.9 386 29.3
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 8.2e-28 130.6 550 26.7
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.4e-27 129.8 1158 29.0
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.8e-27 129.4 1042 29.8
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.2e-25 122.5 511 34.1
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.1e-24 120.2 204 46.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.0e-22 113.6 384 27.9
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.0e-22 111.7 444 26.4
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.6e-21 109.0 382 28.8
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.5e-18 98.6 945 28.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.9e-17 95.5 507 24.7
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-16 93.6 104 53.8
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.5e-13 83.2 507 24.5
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.0e-11 74.3 404 28.2
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.2e-10 73.6 309 30.1
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 2.5e-08 65.9 92 50.0
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.1e-07 61.2 214 26.6
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.1e-07 61.2 214 26.6
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 3.0e-06 58.9 307 25.1


User provided reference genes

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