Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 1.9e-159 565.8 295 100.0
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.4e-124 448.7 294 77.6
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.1e-122 443.7 294 76.9
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.0e-120 437.2 295 76.3
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.4e-117 426.8 308 73.1
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 6.8e-117 424.5 294 73.8
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 1.4e-114 416.8 295 74.6
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 2.4e-114 416.0 304 71.7
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 8.6e-112 407.5 296 71.6
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.1e-111 407.1 294 70.7
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.5e-111 406.8 294 69.7
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 1.9e-111 406.4 307 69.7
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.5e-111 406.0 302 69.9
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 5.6e-111 404.8 302 69.5
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 1.2e-110 403.7 302 69.5
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.2e-110 403.7 302 69.5
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 1.2e-110 403.7 293 71.3
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 1.6e-110 403.3 295 69.5
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 2.1e-110 402.9 294 70.1
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 3.6e-110 402.1 253 81.0
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 3.6e-110 402.1 310 69.4
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 4.7e-110 401.7 295 71.2
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 4.7e-110 401.7 299 70.6
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.0e-110 401.0 300 69.7
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 1.8e-109 399.8 304 68.1
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 4.0e-109 398.7 335 64.8
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 5.2e-109 398.3 295 70.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.8e-109 397.9 300 69.3
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 4.9e-107 391.7 296 68.9
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 1.9e-106 389.8 296 67.6
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 2.4e-106 389.4 294 69.0
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.4e-106 389.4 294 67.3
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 5.4e-106 388.3 304 68.4
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.6e-105 386.7 294 67.7
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 3.5e-105 385.6 295 67.5
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 3.5e-105 385.6 294 66.0
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 4.6e-105 385.2 295 68.5
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 5.0e-104 381.7 296 67.9
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 6.6e-104 381.3 295 66.1
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.1e-103 380.6 310 66.5
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 2.5e-103 379.4 293 66.9
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 4.3e-103 378.6 294 68.0
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 7.3e-103 377.9 314 63.4
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 9.5e-103 377.5 305 65.2
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 1.1e-101 374.0 298 65.4
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 1.8e-101 373.2 296 66.2
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 2.3e-101 372.9 314 63.4
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 4.0e-101 372.1 303 64.0
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.2e-101 371.7 301 66.1
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 8.9e-101 370.9 292 67.1
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 8.9e-101 370.9 297 62.6
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.5e-100 370.2 297 64.0
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.5e-100 370.2 297 64.0
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 1.5e-100 370.2 313 63.6
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 1.5e-100 370.2 293 63.8
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 2.0e-100 369.8 295 64.7
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 7.5e-100 367.9 314 63.1
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.5e-100 367.9 292 67.8
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 1.3e-99 367.1 314 62.4
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 1.3e-99 367.1 314 62.4
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 1.3e-99 367.1 309 63.1
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 2.9e-99 365.9 314 62.1
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 2.9e-99 365.9 314 63.1
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 2.9e-99 365.9 314 63.1
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 2.9e-99 365.9 297 63.3
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 4.9e-99 365.2 314 63.1
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 4.9e-99 365.2 297 63.3
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 8.3e-99 364.4 315 63.5
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 1.1e-98 364.0 306 64.4
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 1.4e-98 363.6 315 61.9
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.0e-96 357.5 293 64.5
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 4.3e-95 352.1 302 62.3
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 4.3e-95 352.1 296 64.5
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 9.5e-95 350.9 304 60.9
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 4.7e-94 348.6 310 59.7
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 8.1e-94 347.8 313 60.7
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 3.1e-93 345.9 298 64.8
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 3.1e-93 345.9 308 61.7
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 3.4e-92 342.4 294 63.3
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 7.5e-92 341.3 297 60.9
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 1.9e-90 336.7 302 60.9
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 2.4e-90 336.3 297 58.9
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.4e-90 336.3 296 62.8
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 1.2e-89 334.0 299 62.9
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 7.8e-89 331.3 305 61.0
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 4.3e-87 325.5 266 63.5
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 2.1e-86 323.2 285 60.7
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.4e-85 320.5 206 79.1
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 8.9e-85 317.8 293 60.8
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 3.8e-83 312.4 296 58.8
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 3.2e-82 309.3 296 59.5
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.7e-81 306.2 259 61.8
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 6.0e-81 305.1 264 59.5
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 5.1e-80 302.0 272 61.4
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 9.6e-79 297.7 304 54.3
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 1.1e-77 294.3 257 60.3
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 6.4e-75 285.0 295 53.6
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 4.2e-74 282.3 310 53.2
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 2.3e-72 276.6 203 69.0
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 4.0e-69 265.8 242 59.9
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 4.5e-68 262.3 306 50.0
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 2.9e-59 233.0 233 54.1
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 6.0e-57 225.3 301 46.5
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.4e-53 214.2 278 47.1
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 4.2e-50 202.6 306 43.5
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 7.1e-50 201.8 134 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 2.7e-49 199.9 283 42.8
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 1.5e-47 194.1 187 56.7
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.3e-47 193.0 277 44.4
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 2.4e-45 186.8 142 65.5
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 4.5e-44 182.6 273 42.1
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.1e-42 177.9 296 41.6
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 8.8e-40 168.3 130 70.8
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 7.4e-39 165.2 303 38.0
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 3.7e-38 162.9 299 37.8
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.0e-35 154.8 119 67.2
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.3e-35 154.5 180 50.0
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.5e-34 150.2 177 48.6
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 3.2e-34 149.8 126 63.5
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.2e-33 147.9 177 48.0
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.1e-33 147.1 302 37.1
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.1e-31 141.4 110 68.2
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 2.2e-27 127.1 128 52.3
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 4.2e-26 122.9 120 55.8
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 3.0e-24 116.7 94 64.9
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 4.4e-23 112.8 158 46.2
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.7e-22 110.9 149 43.6
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 9.1e-21 105.1 99 59.6
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 9.1e-21 105.1 125 51.2
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 9.1e-21 105.1 68 70.6
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 4.8e-14 82.8 91 53.8
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 2.0e-12 77.4 90 47.8
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 8.8e-08 62.0 61 55.7
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 5.7e-07 59.3 64 54.7


User provided reference genes

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