Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 2453.3 1273 100.0
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1489.2 1300 65.0
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1456.8 1315 63.1
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1453.3 1293 64.5
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1337.4 1123 64.8
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1335.9 1288 59.6
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1324.3 1299 59.0
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1307.0 1191 61.0
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1293.5 1174 60.9
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1284.6 1280 57.6
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1246.5 1324 55.6
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1246.1 1285 56.7
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1239.6 1290 55.3
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1231.1 1321 54.3
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1219.9 1102 61.2
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1207.2 1286 54.3
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1204.1 1288 55.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1199.9 1326 54.1
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1196.8 1300 53.5
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1189.9 1300 53.0
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1183.7 963 65.5
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1183.3 1312 53.4
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1177.5 1283 54.2
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1173.3 1292 53.0
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1171.4 1098 58.9
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1165.2 1328 51.3
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1164.4 1104 57.6
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 0.0e+00 1161.4 1286 53.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1161.0 1288 52.3
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1154.8 1196 54.4
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1153.3 1293 53.4
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 0.0e+00 1150.6 1021 62.0
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1150.2 1445 49.1
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1147.9 1309 50.3
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1142.9 1293 52.9
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 0.0e+00 1140.6 1372 51.2
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1140.2 1294 52.9
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1137.9 1099 57.1
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1134.4 1171 54.7
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1133.2 1174 54.9
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1122.8 1125 56.0
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1119.0 1255 52.0
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1112.4 1116 57.2
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1110.1 1389 49.7
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 1107.0 1285 51.8
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 0.0e+00 1105.9 1292 52.2
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1105.1 1125 55.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1102.0 1310 49.9
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1101.3 1284 51.2
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1101.3 1109 56.1
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 0.0e+00 1101.3 1373 49.5
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1100.9 1287 50.7
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1100.1 1299 50.2
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 0.0e+00 1100.1 1314 50.2
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1097.8 1307 49.4
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 0.0e+00 1097.0 1329 49.8
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1096.6 1194 52.6
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1093.6 1203 53.8
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1092.4 1285 50.9
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1092.0 1285 50.8
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1091.6 1295 49.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1087.8 1297 51.2
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1086.6 1174 53.3
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1085.9 1286 50.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 1085.9 1286 50.4
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1083.9 1286 50.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1083.2 1202 52.3
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 0.0e+00 1082.0 1115 54.2
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1076.2 1283 50.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 8.7e-312 1074.3 1342 49.1
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 2.3e-310 1069.3 1166 53.1
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 6.6e-310 1067.8 1334 48.5
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 4.3e-309 1065.1 1321 48.3
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 6.2e-308 1061.2 1339 47.9
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 4.0e-307 1058.5 1201 51.5
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 4.0e-307 1058.5 957 59.7
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 5.2e-307 1058.1 1325 48.5
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.4e-306 1055.0 1332 49.0
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.3e-305 1053.5 984 59.2
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.3e-305 1053.5 1167 51.7
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 6.4e-305 1051.2 1353 48.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.1e-304 1050.4 1286 49.6
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-300 1036.9 1328 48.7
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.1e-296 1023.8 950 58.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.4e-296 1021.5 1342 47.2
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 3.9e-294 1015.4 1290 48.6
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 9.6e-293 1010.7 1134 52.2
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.3e-289 1000.3 1195 51.2
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 7.1e-288 994.6 1463 44.6
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.4e-275 953.7 1160 51.0
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.5e-269 933.7 1139 49.3
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.4e-267 927.2 1331 44.3
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 7.4e-261 904.8 1157 48.1
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 3.7e-260 902.5 1297 44.0
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 4.3e-253 879.0 1289 44.1
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.3e-251 872.1 1267 44.8
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 4.2e-248 862.4 1132 46.5
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.2e-233 813.5 971 49.1
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 3.8e-233 812.8 944 51.6
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 4.4e-229 799.3 1293 40.3
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 6.3e-228 795.4 551 72.2
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.9e-225 786.6 1252 42.0
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 3.5e-218 763.1 510 74.7
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.0e-206 724.9 1128 42.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.3e-190 670.6 523 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 6.6e-177 625.9 995 39.7
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.2e-165 588.6 1208 34.3
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.4e-150 537.7 1009 36.2
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 4.9e-148 530.0 646 46.9
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.3e-108 399.1 998 29.9
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.6e-106 391.0 529 44.8
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.2e-81 307.4 242 66.1
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 3.4e-80 304.7 302 58.3
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 6.2e-58 230.7 178 66.3
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.2e-54 218.4 171 64.3
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 4.3e-51 208.0 265 45.3
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.5e-43 183.0 136 69.9
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 2.1e-42 179.1 606 28.2
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.7e-31 142.9 107 62.6
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.8e-28 132.9 238 36.1
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 6.7e-28 131.0 97 66.0
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 8.7e-28 130.6 121 56.2
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.3e-27 128.3 445 31.7
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 9.7e-27 127.1 121 54.5
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.1e-25 122.1 105 61.0
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.2e-24 120.2 138 51.4
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 2.6e-24 119.0 81 69.1
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.9e-20 105.1 120 52.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.5e-19 102.4 125 51.2
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 2.5e-19 102.4 151 43.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 1.1e-17 97.1 77 59.7
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.8e-17 96.3 115 47.0
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 7.7e-16 90.9 70 60.0
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.9e-15 89.0 78 60.3
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 8.5e-07 60.8 54 57.4
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.9e-06 59.7 83 34.9


User provided reference genes

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