Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 3.3e-127 458.4 230 100.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 2.5e-66 256.1 214 63.6
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 3.3e-66 255.8 219 62.1
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 1.6e-65 253.4 223 61.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.8e-64 250.0 221 57.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 4.0e-64 248.8 213 63.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 6.8e-64 248.1 222 60.8
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.5e-63 246.9 216 60.6
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 2.0e-63 246.5 220 59.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.1e-61 240.7 215 58.6
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.2e-60 237.3 215 59.1
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 7.8e-60 234.6 209 60.8
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.3e-59 233.8 218 56.9
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 2.5e-58 229.6 231 53.7
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 5.6e-58 228.4 213 57.7
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 7.3e-58 228.0 217 54.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.6e-57 226.9 209 58.4
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.6e-57 226.9 209 58.4
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.8e-57 226.1 209 58.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 8.0e-57 224.6 206 58.3
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.0e-56 224.2 217 53.5
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.0e-56 224.2 215 56.7
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-56 223.8 222 54.1
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.8e-56 223.4 208 55.3
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 1.8e-56 223.4 211 53.1
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-56 223.0 209 57.4
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.3e-56 223.0 213 58.2
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 5.2e-56 221.9 206 57.3
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 5.2e-56 221.9 215 56.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 8.9e-56 221.1 212 54.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.5e-55 220.3 213 57.7
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.5e-55 220.3 212 59.0
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 4.4e-55 218.8 213 54.9
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 7.5e-55 218.0 217 55.8
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 7.5e-55 218.0 211 52.6
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 1.3e-54 217.2 207 53.6
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.3e-54 217.2 215 52.6
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.7e-54 216.9 217 54.4
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.9e-54 215.3 208 54.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 8.3e-54 214.5 217 56.2
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 8.3e-54 214.5 217 53.0
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.9e-53 213.4 207 53.6
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 3.2e-53 212.6 222 51.4
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 5.4e-53 211.8 212 57.1
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 7.8e-52 208.0 210 51.9
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.3e-51 207.2 230 50.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 1.3e-51 207.2 211 51.2
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.9e-51 205.7 220 50.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.5e-50 203.8 209 53.1
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 2.5e-50 203.0 256 45.7
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 4.7e-49 198.7 214 50.5
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.8e-48 196.8 213 51.6
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 2.3e-48 196.4 218 50.5
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 5.2e-48 195.3 207 51.2
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.2e-48 195.3 207 50.7
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 5.2e-48 195.3 207 50.2
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 8.9e-48 194.5 215 50.7
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 2.0e-47 193.4 211 51.2
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 2.6e-47 193.0 209 48.8
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.6e-47 193.0 221 48.4
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 3.4e-47 192.6 207 50.7
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 4.4e-47 192.2 208 50.0
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 9.8e-47 191.0 216 49.5
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.3e-46 190.7 207 49.8
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.7e-46 190.3 207 49.3
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 2.2e-46 189.9 168 59.5
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 3.7e-46 189.1 214 48.6
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.4e-45 187.2 210 47.6
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.4e-45 187.2 216 46.8
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 4.1e-45 185.7 203 50.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 5.4e-45 185.3 162 58.0
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.2e-45 184.5 214 47.2
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 3.0e-43 179.5 212 45.8
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.9e-43 179.1 203 50.7
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 3.9e-43 179.1 204 49.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 5.1e-43 178.7 203 49.3
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 3.3e-42 176.0 213 47.4
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.2e-41 171.8 212 47.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 8.1e-41 171.4 212 49.1
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.3e-40 169.9 211 44.5
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 6.8e-40 168.3 205 46.3
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 8.9e-40 167.9 205 46.3
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-39 167.2 204 47.5
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.6e-39 166.4 199 48.7
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 2.2e-38 163.3 186 51.1
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 7.1e-37 158.3 168 50.0
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 1.1e-34 151.0 148 57.4
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.3e-34 149.4 200 43.5
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.6e-33 147.1 200 43.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 8.9e-32 141.4 113 62.8
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.0e-31 140.2 211 40.3
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.0e-27 127.9 94 67.0
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.3e-27 127.5 156 47.4
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.3e-27 127.5 90 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 3.9e-27 125.9 164 40.2
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 8.7e-27 124.8 142 48.6
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.1e-26 124.4 208 36.1
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.1e-26 124.4 138 47.1
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.5e-26 123.2 157 45.9
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.3e-25 120.9 191 39.3
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 2.8e-25 119.8 148 48.6
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.4e-24 117.5 151 44.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 2.4e-24 116.7 162 40.7
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.5e-23 114.0 107 54.2
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 2.0e-23 113.6 147 46.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 9.9e-23 111.3 74 77.0
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.7e-22 110.5 147 44.9
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 8.4e-22 108.2 227 33.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.1e-21 107.8 108 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.6e-20 102.4 158 37.3
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 7.8e-20 101.7 144 43.8
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 8.7e-19 98.2 86 58.1
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.5e-18 97.4 121 47.1
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 3.3e-18 96.3 102 50.0
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 4.3e-18 95.9 112 48.2
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 5.6e-18 95.5 62 69.4
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.3e-17 94.4 62 71.0
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 2.8e-17 93.2 62 71.0
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.8e-17 92.4 81 63.0
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.8e-17 92.4 81 63.0
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.1e-13 78.6 61 60.7
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 9.3e-13 78.2 165 30.3
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 5.1e-11 72.4 50 64.0
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 7.4e-10 68.6 83 42.2
MCO14G272 Micromonas commoda HOM05D006306 ORTHO05D007912 3.8e-06 56.2 158 29.7


User provided reference genes

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