Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 3.0e-90 335.1 166 100.0
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.4e-82 309.7 166 92.8
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.7e-77 292.7 168 87.5
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.0e-77 292.0 165 86.7
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 3.9e-77 291.6 149 94.6
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 5.0e-77 291.2 149 94.0
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 5.0e-77 291.2 165 87.9
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.0e-77 291.2 166 86.1
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 6.6e-77 290.8 149 94.0
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 6.6e-77 290.8 168 87.5
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 2.5e-76 288.9 168 83.3
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.5e-76 288.9 167 85.0
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.3e-76 288.5 166 84.9
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 4.3e-76 288.1 164 84.8
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 7.3e-76 287.3 178 79.8
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 7.3e-76 287.3 149 94.0
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.2e-75 286.6 167 84.4
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.6e-75 286.2 170 82.9
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.6e-75 286.2 167 84.4
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.6e-75 286.2 167 83.2
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.1e-75 285.8 177 80.2
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 2.1e-75 285.8 167 83.2
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.1e-75 285.8 153 88.9
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.1e-75 285.8 167 83.8
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.7e-75 284.6 172 82.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.1e-74 283.5 169 84.0
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 1.4e-74 283.1 174 80.5
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.3e-74 282.3 171 84.2
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 4.0e-74 281.6 165 83.6
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 4.0e-74 281.6 159 86.2
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.2e-74 281.2 167 81.4
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 8.9e-74 280.4 165 82.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 8.9e-74 280.4 174 79.9
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.2e-73 280.0 168 82.1
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.2e-73 280.0 165 82.4
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.5e-73 279.6 169 81.1
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.5e-73 279.6 152 88.8
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.5e-73 279.6 163 84.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.0e-73 279.3 167 82.6
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 2.0e-73 279.3 164 82.9
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.0e-73 279.3 168 82.1
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 2.0e-73 279.3 171 83.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.0e-73 279.3 176 80.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.6e-73 278.9 170 81.8
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.6e-73 278.9 170 82.4
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.6e-73 278.9 165 81.8
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.6e-73 278.9 171 81.9
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.6e-73 278.9 160 85.0
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-73 278.1 167 80.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-73 278.1 167 80.2
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-73 277.7 151 88.1
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-73 277.7 164 82.3
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-73 277.7 165 81.2
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 5.8e-73 277.7 165 81.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 5.8e-73 277.7 153 86.9
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 5.8e-73 277.7 151 88.7
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.8e-73 277.7 153 86.9
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 5.8e-73 277.7 170 78.2
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 5.8e-73 277.7 170 80.6
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.5e-73 277.3 151 86.8
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.5e-73 277.3 153 86.9
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 7.5e-73 277.3 153 86.3
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 7.5e-73 277.3 164 81.7
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.8e-73 276.9 169 82.2
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 9.8e-73 276.9 169 81.1
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-72 276.6 153 86.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.7e-72 276.2 169 82.2
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-72 276.2 169 82.2
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-72 276.2 169 82.2
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.7e-72 276.2 167 79.6
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.7e-72 276.2 164 82.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.7e-72 276.2 169 82.2
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.2e-72 275.8 153 86.9
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.2e-72 275.8 153 86.9
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-72 275.8 169 81.7
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.2e-72 275.8 169 81.7
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 3.7e-72 275.0 153 85.0
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 3.7e-72 275.0 153 85.0
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-72 275.0 169 82.2
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.4e-72 274.2 151 85.4
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 6.4e-72 274.2 153 86.3
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 6.4e-72 274.2 163 81.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.4e-72 274.2 169 81.7
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 6.4e-72 274.2 176 77.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 8.3e-72 273.9 170 80.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 8.3e-72 273.9 172 81.4
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.1e-71 273.5 168 81.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.4e-71 273.1 153 86.9
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.4e-71 273.1 153 86.9
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.4e-71 273.1 177 78.5
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.9e-71 272.7 155 83.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 1.9e-71 272.7 155 83.9
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.9e-71 272.7 167 79.6
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 2.4e-71 272.3 165 81.8
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.2e-71 271.9 166 78.9
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 3.2e-71 271.9 178 77.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.2e-71 271.9 174 77.6
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 4.1e-71 271.6 146 89.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 9.2e-71 270.4 152 84.2
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 9.2e-71 270.4 169 79.3
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.2e-70 270.0 151 85.4
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.2e-70 270.0 166 80.7
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.2e-70 270.0 170 79.4
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.6e-70 269.6 164 79.9
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 79.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.1e-70 269.2 178 74.2
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.1e-70 269.2 174 79.9
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 2.1e-70 269.2 164 79.3
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.0e-69 266.9 153 83.7
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.3e-69 266.5 174 79.3
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.3e-69 266.5 151 86.1
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.7e-69 266.2 178 74.2
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.7e-69 266.2 174 79.3
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 2.3e-69 265.8 174 79.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 3.9e-69 265.0 171 77.2
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.9e-69 265.0 167 78.4
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.6e-69 263.8 153 85.6
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.1e-68 263.5 172 76.7
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 5.6e-68 261.2 157 81.5
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.6e-67 259.6 220 61.8
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.1e-67 259.2 153 81.7
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.1e-67 259.2 153 81.7
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.1e-67 259.2 175 76.6
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.6e-67 258.5 153 81.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.6e-67 258.5 152 80.9
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 4.7e-67 258.1 153 81.0
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 8.1e-67 257.3 175 76.0
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 8.1e-67 257.3 175 76.0
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.1e-66 256.9 152 79.6
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 4.0e-66 255.0 152 78.9
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.5e-65 253.1 152 78.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 4.4e-65 251.5 151 78.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.4e-63 246.5 155 76.8
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.4e-63 246.5 152 77.6
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 7.1e-63 244.2 159 72.3
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 6.0e-62 241.1 148 77.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 1.0e-61 240.4 138 81.2
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.3e-60 235.0 166 70.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.8e-58 229.6 128 85.2
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 3.2e-55 218.8 153 71.2
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 7.1e-55 217.6 127 83.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.3e-53 213.4 129 80.6
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 3.3e-52 208.8 164 61.0
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 4.0e-50 201.8 132 75.0
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.1e-45 184.9 167 59.9
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 5.1e-45 184.9 109 78.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.5e-44 183.3 134 66.4
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 9.0e-42 174.1 108 82.4
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.5e-41 173.3 133 60.2
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.4e-41 172.2 153 60.1
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 5.8e-41 171.4 134 61.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 9.9e-41 170.6 134 61.2
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.3e-36 155.6 163 56.4
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 7.4e-36 154.5 91 81.3
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-35 152.1 88 86.4
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.0e-32 144.1 86 83.7
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 3.8e-32 142.1 120 55.8
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-27 127.1 99 62.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.1e-27 126.3 105 66.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.8e-27 125.9 98 67.3
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.8e-24 115.5 163 46.0
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.8e-24 115.5 120 45.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 5.5e-23 111.7 71 76.1
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.3e-23 110.9 133 42.1
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.3e-23 110.9 133 42.1
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-22 110.5 164 39.0
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.8e-21 106.7 57 82.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.8e-21 106.7 62 79.0
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.2e-19 99.8 51 80.4
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.9e-16 89.4 55 76.4
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.4e-15 87.0 49 79.6
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 4.2e-15 85.5 96 42.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 4.2e-15 85.5 96 42.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.6e-14 83.6 95 41.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.5e-12 76.3 60 55.0
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 2.8e-11 72.8 95 43.2


User provided reference genes

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