Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 0.0e+00 1092.4 551 100.0
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 1.8e-227 792.7 555 74.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 5.7e-226 787.7 553 74.0
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.8e-219 766.1 555 73.7
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.3e-218 761.9 525 75.6
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 3.7e-217 758.4 556 71.9
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 5.5e-213 744.6 553 72.0
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.0e-211 740.3 553 71.6
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 5.2e-211 738.0 539 71.8
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 7.5e-210 734.2 554 70.9
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 9.8e-210 733.8 594 67.3
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.7e-209 733.0 553 71.2
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 3.5e-207 725.3 564 70.6
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 2.9e-206 722.2 553 69.1
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 5.2e-203 711.4 556 68.3
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.3e-201 706.8 559 69.1
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 8.3e-201 704.1 567 67.9
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 8.3e-201 704.1 560 68.8
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 7.3e-197 691.0 543 68.3
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 1.2e-196 690.3 563 66.6
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 6.1e-196 688.0 543 67.8
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.0e-195 687.2 564 66.1
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.4e-195 686.8 543 68.0
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 4.9e-193 678.3 568 64.6
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.4e-192 674.9 568 65.3
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.2e-191 673.7 473 72.7
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.3e-190 669.5 525 68.8
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 2.1e-188 662.9 564 62.6
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 2.1e-188 662.9 571 64.4
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 1.5e-186 656.8 556 61.7
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.0e-186 656.4 439 75.4
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 5.8e-186 654.8 551 65.5
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 5.8e-186 654.8 471 71.8
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 1.7e-185 653.3 450 74.2
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 6.4e-185 651.4 566 62.7
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 1.9e-184 649.8 552 62.7
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 3.2e-184 649.0 471 71.3
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 9.2e-184 647.5 564 61.5
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 9.2e-184 647.5 539 64.2
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.6e-183 646.7 504 66.3
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.6e-183 646.7 565 61.2
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 6.0e-183 644.8 471 71.5
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.0e-182 644.0 471 70.5
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.3e-182 642.9 550 61.1
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 2.3e-182 642.9 471 70.5
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 6.6e-182 641.3 568 62.5
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 6.6e-182 641.3 480 69.8
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 1.9e-181 639.8 563 62.2
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.6e-180 636.7 553 62.7
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 2.1e-180 636.3 550 62.5
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 3.6e-180 635.6 471 70.7
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 6.2e-180 634.8 564 59.6
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 1.8e-179 633.3 550 63.1
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 8.9e-179 630.9 548 63.1
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 8.9e-179 630.9 449 72.2
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 2.0e-178 629.8 550 61.1
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 4.4e-178 628.6 546 61.9
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 5.8e-178 628.2 474 69.2
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.3e-177 627.1 559 63.9
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 4.9e-177 625.2 471 66.9
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 8.3e-177 624.4 524 65.1
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.1e-176 624.0 546 61.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 9.2e-176 620.9 495 67.3
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.6e-175 620.2 575 59.3
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.1e-175 619.8 491 65.6
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 4.6e-175 618.6 559 61.0
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 5.1e-174 615.1 537 60.9
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.6e-174 614.8 498 66.7
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 8.6e-174 614.4 537 61.3
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.6e-174 614.4 498 66.3
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.5e-173 612.8 498 66.1
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-173 612.5 554 61.9
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 4.3e-173 612.1 537 60.7
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.3e-173 612.1 498 65.9
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 7.3e-173 611.3 537 60.7
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.3e-173 611.3 554 61.7
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.6e-172 610.1 537 60.7
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 1.4e-171 607.1 549 59.9
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.5e-170 603.6 437 70.0
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 2.0e-170 603.2 476 66.4
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 7.6e-170 601.3 553 59.9
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.9e-168 596.7 561 57.4
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 4.1e-168 595.5 566 56.9
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 2.1e-167 593.2 565 59.1
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.7e-167 592.8 562 59.3
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.7e-166 590.1 545 59.3
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 8.6e-166 587.8 539 59.9
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.1e-165 587.4 555 57.1
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 5.2e-163 578.6 436 67.2
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 1.3e-161 573.9 565 58.6
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 3.2e-160 569.3 505 60.2
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.7e-159 566.2 468 64.1
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.5e-157 560.5 566 55.5
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 2.1e-156 556.6 682 49.3
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 4.0e-155 552.4 415 66.3
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 2.2e-153 546.6 491 60.5
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 8.7e-150 534.6 508 58.5
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.6e-148 530.4 560 54.8
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 8.1e-148 528.1 550 55.5
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.4e-144 517.3 504 55.2
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 8.7e-142 508.1 416 63.5
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.6e-140 503.8 318 78.9
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.3e-137 494.2 387 66.7
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.9e-137 493.0 470 58.7
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.9e-137 493.0 493 54.0
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 3.8e-137 492.7 517 52.6
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 3.2e-136 489.6 330 75.2
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 3.4e-114 416.4 554 47.7
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 1.7e-113 414.1 442 53.6
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.8e-107 394.0 463 52.1
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.7e-105 387.5 329 64.1
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.4e-99 367.9 379 52.0
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 9.8e-93 345.1 287 58.2
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 9.1e-91 338.6 259 66.4
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.5e-72 277.3 207 68.6
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.2e-69 268.5 527 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 3.4e-69 266.9 328 44.8
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 7.0e-67 259.2 292 49.3
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 4.1e-59 233.4 510 31.4
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.5e-48 197.6 246 48.4
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.8e-38 164.9 238 47.5
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 3.8e-36 157.1 223 36.8
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.4e-35 153.3 202 44.6
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 7.9e-34 149.4 181 49.7
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.9e-33 147.1 95 72.6
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.9e-24 118.2 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.3e-23 115.5 62 83.9
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 7.9e-18 96.3 83 59.0
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.0e-17 94.4 152 42.1
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 1.3e-07 62.4 49 67.3


User provided reference genes

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