Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 0.0e+00 1220.3 611 100.0
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 1.6e-245 852.8 616 72.4
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 4.8e-242 841.3 609 71.9
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 4.5e-240 834.7 615 69.1
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 1.4e-238 829.7 626 69.3
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 9.4e-238 827.0 630 68.7
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 3.0e-236 822.0 627 68.7
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 7.2e-230 800.8 611 66.1
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 1.2e-229 800.0 608 68.8
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 4.5e-224 781.6 615 67.5
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 2.2e-223 779.2 616 66.2
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.5e-222 775.8 598 68.1
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.7e-221 772.3 596 67.4
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 8.8e-220 767.3 613 66.4
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 2.6e-219 765.8 619 65.1
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.8e-218 762.3 611 64.0
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 5.4e-217 758.1 616 65.1
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.5e-214 749.2 619 64.6
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 7.2e-214 747.7 595 65.7
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 5.2e-212 741.5 617 63.4
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.4e-209 731.5 594 65.2
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 3.5e-208 728.8 617 63.2
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.8e-207 725.3 598 64.0
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.6e-207 724.5 598 63.9
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.5e-206 722.6 616 60.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 2.8e-205 719.2 589 64.3
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 4.7e-205 718.4 617 61.9
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 8.0e-205 717.6 612 62.4
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 4.0e-204 715.3 533 68.9
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 6.8e-204 714.5 612 62.4
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 8.9e-204 714.1 616 61.0
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 5.8e-203 711.4 633 61.5
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 3.7e-202 708.8 623 62.0
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 7.0e-201 704.5 618 59.7
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 9.2e-201 704.1 612 61.6
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.2e-201 704.1 620 61.6
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 2.0e-200 703.0 613 60.2
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.0e-200 703.0 587 63.5
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 6.0e-200 701.4 624 59.5
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.0e-199 700.7 614 59.0
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 3.9e-199 698.7 616 59.4
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 8.6e-199 697.6 603 62.9
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.9e-198 696.4 610 60.0
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 4.3e-198 695.3 616 60.4
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 4.3e-198 695.3 613 60.7
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.2e-197 693.7 614 60.6
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 5.2e-196 688.3 618 60.4
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 3.4e-195 685.6 611 60.1
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 9.8e-195 684.1 605 61.2
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 2.2e-194 682.9 626 57.8
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 4.9e-194 681.8 606 61.1
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 6.4e-194 681.4 607 58.6
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.1e-193 680.6 618 58.9
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.1e-193 680.6 609 59.8
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 5.4e-193 678.3 608 60.2
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-192 677.2 647 56.9
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.6e-192 676.8 502 71.3
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 4.6e-192 675.2 618 60.0
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 6.0e-192 674.9 605 60.3
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.7e-191 673.3 624 59.6
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 5.0e-191 671.8 605 59.8
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.1e-190 670.6 605 60.3
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.5e-190 670.2 600 58.7
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 3.3e-190 669.1 612 59.8
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 5.6e-190 668.3 615 59.3
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 4.7e-189 665.2 572 62.2
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 8.9e-188 661.0 606 58.3
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.2e-187 660.6 596 59.7
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.1e-185 654.1 592 59.8
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 2.4e-185 652.9 621 58.3
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 3.2e-185 652.5 592 60.3
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.2e-184 650.6 496 67.7
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.6e-184 650.2 625 56.5
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 2.7e-184 649.4 664 53.9
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 1.7e-183 646.7 670 52.4
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 3.6e-181 639.0 605 56.5
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 7.6e-179 631.3 605 57.7
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 4.2e-177 625.5 516 62.2
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-176 624.0 612 57.0
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 6.0e-176 621.7 492 65.4
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 5.6e-174 615.1 612 55.6
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 7.6e-171 604.7 481 67.6
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.9e-169 600.1 521 62.8
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 3.2e-169 599.4 565 57.9
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 7.1e-169 598.2 610 53.4
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 1.9e-166 590.1 625 55.4
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 3.1e-164 582.8 590 54.9
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 1.5e-163 580.5 516 60.5
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 1.2e-160 570.9 567 54.3
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.8e-156 557.0 469 62.5
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 6.2e-149 531.9 474 55.5
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 2.4e-148 530.0 456 62.1
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.4e-148 530.0 508 57.1
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 2.6e-147 526.6 489 54.2
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 9.3e-145 518.1 447 61.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 2.3e-143 513.5 416 62.7
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 3.3e-134 483.0 350 69.4
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.7e-130 470.7 657 42.2
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 1.4e-127 461.1 627 41.8
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 5.1e-127 459.1 600 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 2.1e-120 437.2 642 40.0
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 4.4e-118 429.5 342 64.6
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.4e-116 424.5 366 60.9
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 8.0e-112 408.7 486 52.5
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 2.0e-99 367.5 467 43.0
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.7e-98 364.4 388 48.5
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 2.2e-93 347.4 343 57.4
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.4e-92 344.0 297 60.6
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 6.4e-69 266.2 215 58.1
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 1.1e-68 265.4 253 57.7
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 8.6e-66 255.8 380 39.5
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-63 248.1 162 73.5
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-63 248.1 162 73.5
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-63 248.1 162 73.5
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.8e-63 248.1 162 73.5
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 2.4e-63 247.7 335 42.1
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 2.9e-61 240.7 183 62.3
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 4.8e-56 223.4 152 65.8
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 1.4e-55 221.9 226 59.3
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 2.0e-54 218.0 196 59.7
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 8.4e-53 212.6 216 53.7
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.4e-52 211.8 227 53.3
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 3.5e-43 180.6 169 52.1
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 2.5e-36 157.9 540 27.8
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 9.3e-36 156.0 231 45.0
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 6.0e-35 153.3 98 70.4
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 4.3e-33 147.1 373 27.3
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.1e-32 144.8 162 50.0
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.4e-31 142.1 169 42.0
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.0e-30 138.3 140 45.7
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 3.8e-29 134.0 140 56.4
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.1e-28 132.5 227 33.9
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 7.1e-28 129.8 113 69.9
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.9e-25 121.7 67 82.1
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 3.4e-22 110.9 171 37.4
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 9.4e-20 102.8 118 44.1
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 4.6e-19 100.5 87 73.6
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 9.7e-17 92.8 45 88.9
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 2.8e-16 91.3 162 37.0
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-15 87.0 140 34.3
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.0e-13 82.8 91 62.6
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 1.5e-09 68.9 84 39.3
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 2.0e-09 68.6 71 52.1
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.7e-08 65.5 160 33.8
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 6.3e-08 63.5 58 56.9
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 6.3e-08 63.5 66 51.5
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.1e-07 61.2 58 51.7
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 9.1e-07 59.7 102 33.3
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 1.2e-06 59.3 67 46.3
Eucgr.C03079 Eucalyptus grandis HOM05D002465 ORTHO05D194609 2.0e-06 58.5 50 58.0


User provided reference genes

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