Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 2.3e-174 615.5 306 100.0
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.9e-157 559.3 307 92.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.1e-111 406.4 296 70.3
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 5.3e-107 391.7 306 67.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 2.2e-105 386.3 304 63.5
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.1e-103 378.3 302 64.2
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.0e-102 377.5 302 64.2
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.4e-102 377.1 302 64.9
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.8e-102 376.7 305 60.7
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.3e-102 376.3 285 66.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 2.3e-102 376.3 301 63.5
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 3.0e-102 375.9 300 63.3
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 3.9e-102 375.6 302 63.9
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 5.1e-102 375.2 304 65.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.7e-102 374.8 300 62.0
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 2.0e-101 373.2 298 64.1
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 7.4e-101 371.3 297 65.0
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 4.8e-100 368.6 306 59.2
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 8.2e-100 367.9 305 60.3
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.8e-99 366.7 306 59.5
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.8e-99 366.7 272 63.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.4e-99 366.3 304 64.1
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.1e-99 365.9 302 62.6
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-99 365.9 316 61.1
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.1e-99 365.5 316 60.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 7.0e-99 364.8 308 61.7
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.2e-98 364.0 298 62.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.6e-98 363.6 305 60.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.6e-98 363.6 265 65.3
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.5e-98 362.5 272 63.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.5e-98 362.1 313 58.1
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 5.9e-98 361.7 272 62.9
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 8.5e-97 357.8 300 62.0
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 3.2e-96 355.9 304 61.5
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 3.2e-96 355.9 307 57.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 4.2e-96 355.5 263 67.7
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 4.2e-96 355.5 307 57.3
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 1.2e-95 354.0 304 61.8
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.6e-95 353.6 332 58.4
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.7e-95 352.8 320 57.5
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.6e-95 352.4 214 76.6
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 8.0e-95 351.3 348 53.4
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.0e-94 350.9 302 60.6
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.4e-93 345.5 306 56.5
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.3e-92 344.0 254 65.7
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 2.8e-92 342.8 269 63.2
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 2.8e-92 342.8 311 58.5
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 6.3e-92 341.7 303 57.8
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.8e-91 340.1 300 58.3
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.8e-91 340.1 300 58.3
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.2e-90 337.4 296 56.8
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.6e-90 337.0 242 66.9
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.0e-90 336.7 301 56.5
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.7e-90 336.3 254 65.4
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 5.9e-90 335.1 309 56.6
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 5.9e-90 335.1 266 61.3
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.3e-89 334.0 237 65.8
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.3e-89 334.0 300 57.7
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 5.0e-89 332.0 274 60.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.0e-89 332.0 297 55.9
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 8.5e-89 331.3 288 59.7
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 8.5e-89 331.3 302 56.3
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 8.5e-89 331.3 305 54.8
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.1e-88 330.9 303 55.1
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.1e-88 330.9 300 56.7
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.1e-88 330.9 299 57.5
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-88 330.5 251 64.1
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.9e-88 330.1 337 55.2
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.9e-88 330.1 363 51.2
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.5e-88 329.7 295 58.0
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.5e-88 329.7 298 56.4
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 5.5e-88 328.6 304 56.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 7.2e-88 328.2 305 54.4
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 9.4e-88 327.8 302 56.3
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 9.4e-88 327.8 298 56.7
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-87 327.4 254 64.2
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.2e-87 327.4 304 56.9
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.7e-87 325.5 289 57.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.7e-87 325.5 289 57.8
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 6.1e-87 325.1 303 54.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 8.0e-87 324.7 267 57.7
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.4e-86 323.9 286 56.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.4e-86 323.9 251 62.9
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.3e-86 323.2 253 63.2
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 2.3e-86 323.2 294 56.1
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 3.0e-86 322.8 305 57.0
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 4.0e-86 322.4 217 67.3
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 8.8e-86 321.2 212 72.6
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 2.6e-85 319.7 287 57.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.6e-85 319.7 251 62.5
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.4e-85 319.3 251 62.2
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 9.8e-85 317.8 233 64.8
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 9.8e-85 317.8 303 54.5
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.3e-84 317.4 315 52.4
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 2.8e-84 316.2 300 53.7
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 3.7e-84 315.8 304 57.6
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 6.3e-84 315.1 254 59.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-83 314.3 257 58.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 4.1e-83 312.4 305 54.8
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.2e-82 310.8 333 52.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 1.6e-82 310.5 228 65.4
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.6e-82 310.5 283 57.6
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 2.7e-82 309.7 258 58.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 4.5e-82 308.9 258 58.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.9e-80 303.5 310 52.6
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.2e-80 301.6 330 49.7
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.2e-79 300.8 302 53.6
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.7e-79 299.7 229 63.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.8e-78 297.0 302 53.0
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.4e-77 292.7 184 74.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.3e-76 290.8 308 53.2
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.8e-76 289.7 300 49.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 4.1e-75 285.8 312 51.9
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.7e-74 283.1 210 65.2
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 1.0e-73 281.2 242 57.4
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 5.0e-73 278.9 332 46.7
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.6e-66 255.8 224 57.6
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.9e-65 252.7 305 48.2
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 8.6e-65 251.5 270 47.8
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.6e-63 246.1 235 50.6
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 4.7e-63 245.7 167 67.1
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.3e-60 237.7 252 49.2
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 1.9e-59 233.8 213 57.3
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.2e-59 231.5 204 58.8
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.3e-57 227.6 235 48.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.9e-56 223.8 163 66.3
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 7.3e-56 221.9 160 68.8
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.2e-55 221.1 192 60.4
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.1e-54 216.5 228 44.7
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.1e-54 216.5 228 44.7
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.2e-50 204.5 235 43.0
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.6e-47 194.1 193 51.3
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 2.0e-45 187.2 124 68.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.1e-43 181.4 121 71.1
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 4.1e-43 179.5 119 67.2
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 7.1e-43 178.7 168 57.7
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 9.2e-43 178.3 228 40.8
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-41 174.5 200 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 8.6e-41 171.8 129 63.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 4.7e-39 166.0 140 59.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 1.2e-34 151.4 287 36.9
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 8.7e-33 145.2 108 59.3
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.6e-31 139.8 153 48.4
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 2.4e-30 137.1 126 57.1
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 7.6e-29 132.1 162 51.2
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 2.8e-23 113.6 172 42.4
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 6.9e-22 109.0 172 37.8
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.1e-19 101.7 105 47.6
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 4.2e-19 99.8 75 57.3
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 9.3e-19 98.6 78 61.5
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.0e-12 78.6 121 43.0
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 7.9e-10 68.9 38 73.7
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 2.3e-09 67.4 45 64.4
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.0e-09 67.0 54 63.0
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 6.7e-09 65.9 78 42.3
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 4.3e-08 63.2 54 59.3
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.6e-07 61.2 38 71.1


User provided reference genes

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