Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 2.2e-182 642.1 319 100.0
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 8.6e-158 560.5 307 92.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.2e-130 470.3 308 74.7
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.1e-127 459.5 309 72.2
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.2e-122 443.7 321 66.4
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.4e-120 436.8 316 69.9
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 7.8e-119 431.0 319 64.6
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.0e-118 430.6 319 63.9
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 1.7e-118 429.9 319 63.3
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 1.7e-118 429.9 309 67.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.3e-118 429.5 317 66.6
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 3.9e-118 428.7 318 66.7
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 5.1e-118 428.3 321 66.0
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-117 426.8 286 70.3
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.6e-116 423.3 314 65.3
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.1e-116 422.9 314 67.2
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.8e-116 422.5 283 67.8
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 6.2e-116 421.4 317 64.4
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.1e-115 420.6 325 61.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.8e-115 419.9 319 66.5
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.0e-115 418.7 335 63.3
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.3e-115 418.3 335 63.0
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 5.3e-115 418.3 283 67.5
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.5e-114 416.8 282 67.4
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.4e-114 415.6 319 63.6
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.4e-114 415.2 283 66.8
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.9e-114 414.1 319 61.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.3e-113 413.7 323 61.9
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.3e-113 413.7 319 61.1
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 2.4e-112 409.5 337 60.5
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 2.1e-111 406.4 326 63.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 4.6e-111 405.2 321 63.2
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 6.0e-111 404.8 317 63.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 6.0e-111 404.8 321 63.9
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.0e-110 404.1 290 68.3
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.0e-110 404.1 351 60.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.9e-109 399.8 369 55.3
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 2.5e-109 399.4 322 60.9
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 2.4e-107 392.9 321 62.0
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 3.1e-107 392.5 319 62.4
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 5.8e-106 388.3 317 62.5
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.9e-105 385.2 323 58.2
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.4e-105 384.8 269 66.2
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 8.4e-105 384.4 308 62.7
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.9e-104 383.3 317 59.0
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 4.2e-104 382.1 304 62.2
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.2e-104 382.1 286 64.3
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 7.1e-104 381.3 271 66.8
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 9.3e-104 380.9 354 57.1
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 1.2e-103 380.6 325 57.8
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 2.7e-103 379.4 317 58.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 3.5e-103 379.0 381 54.3
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.0e-102 377.5 317 58.4
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 3.0e-102 375.9 315 59.4
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 3.0e-102 375.9 315 59.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 3.0e-102 375.9 278 65.8
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 3.9e-102 375.6 316 59.2
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.9e-102 375.6 324 58.3
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 5.1e-102 375.2 290 61.4
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 6.7e-102 374.8 316 58.2
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.1e-101 374.0 314 57.6
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-101 373.6 282 64.2
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.9e-101 373.2 320 57.5
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 1.9e-101 373.2 282 62.4
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 3.3e-101 372.5 229 75.1
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 7.4e-101 371.3 306 62.1
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 9.6e-101 370.9 318 56.9
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 9.6e-101 370.9 283 62.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.6e-100 370.2 284 60.2
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.8e-100 369.4 319 57.4
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 3.7e-100 369.0 320 56.6
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.8e-100 368.6 282 60.3
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 8.1e-100 367.9 279 63.1
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 8.1e-100 367.9 248 66.1
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.1e-99 367.5 321 57.9
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.8e-99 366.7 238 69.7
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 4.0e-99 365.5 320 57.8
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.0e-99 365.5 313 58.5
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 6.9e-99 364.8 303 58.7
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 9.0e-99 364.4 322 55.3
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 1.2e-98 364.0 272 62.9
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.2e-98 364.0 318 56.3
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.5e-98 363.6 344 55.5
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.5e-98 363.6 318 56.3
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 2.6e-98 362.8 314 56.4
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 3.4e-98 362.5 305 58.4
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 3.4e-98 362.5 347 53.9
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.5e-98 362.1 318 57.2
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 5.8e-98 361.7 215 78.1
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 7.6e-98 361.3 279 62.4
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.7e-97 360.1 281 61.9
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.8e-97 359.0 322 55.0
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 4.9e-97 358.6 321 58.9
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 1.4e-96 357.1 279 61.6
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 1.9e-96 356.7 279 61.6
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 4.2e-96 355.5 249 66.7
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 9.3e-96 354.4 323 56.0
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 1.2e-95 354.0 301 58.1
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.0e-94 350.9 276 58.7
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.8e-94 350.1 276 58.3
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.0e-94 349.4 286 58.0
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 3.0e-94 349.4 245 64.9
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 8.7e-94 347.8 305 55.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.1e-93 347.4 327 55.4
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-93 347.1 362 51.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.3e-93 345.9 319 56.4
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 5.7e-93 345.1 289 59.2
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.1e-91 339.0 319 55.2
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.7e-89 333.6 325 53.8
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 3.2e-88 329.3 226 68.1
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 7.9e-87 324.7 259 58.3
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.3e-85 319.3 328 50.0
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 3.3e-85 319.3 329 52.9
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-82 310.8 364 46.4
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.6e-79 300.4 229 63.8
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 6.1e-79 298.5 185 75.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.8e-78 297.0 324 50.0
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.3e-76 288.5 282 50.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.4e-74 282.7 235 58.3
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.8e-73 279.3 229 55.5
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.2e-72 275.0 209 63.6
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.1e-70 268.9 268 51.1
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.4e-67 260.8 215 59.5
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 2.5e-64 250.0 236 50.4
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.0e-62 244.6 200 60.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.0e-62 243.0 195 63.1
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.3e-61 239.6 242 45.9
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.3e-61 239.6 242 45.9
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 4.4e-61 239.2 155 70.3
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 2.2e-60 236.9 213 57.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 1.4e-59 234.2 264 42.4
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.5e-58 229.6 161 70.2
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.5e-58 229.2 138 74.6
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-49 201.1 211 50.7
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.9e-48 197.2 160 60.6
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 5.5e-48 195.7 261 38.7
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 5.5e-48 195.7 193 51.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.8e-44 183.3 306 37.9
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.4e-43 180.3 166 58.4
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 9.2e-43 178.3 116 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 4.3e-40 169.5 129 62.8
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 8.9e-38 161.8 187 44.4
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.6e-33 145.6 108 60.2
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 2.8e-31 140.2 153 48.4
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 6.8e-30 135.6 111 60.4
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.1e-27 128.3 163 50.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 2.6e-21 107.1 172 37.8
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 2.6e-21 107.1 106 49.1
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 2.2e-20 104.0 71 67.6
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.9e-20 103.6 76 61.8
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 3.2e-19 100.1 78 62.8
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.1e-19 99.0 76 57.9
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 2.7e-18 97.1 72 56.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.4e-13 79.7 121 43.8
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.3e-09 68.2 36 77.8
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 8.6e-09 65.5 46 60.9
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.2e-07 61.6 38 71.1


User provided reference genes

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