Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 2.1e-131 472.2 216 100.0
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 5.1e-106 387.9 182 96.7
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 2.9e-101 372.1 222 77.9
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 3.8e-101 371.7 226 73.5
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 5.0e-101 371.3 219 77.6
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 1.6e-99 366.3 220 72.7
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 2.7e-99 365.5 223 73.5
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 3.6e-99 365.2 224 73.2
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.0e-98 363.6 216 73.1
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.0e-98 363.6 216 73.1
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 1.0e-98 363.6 225 72.0
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 3.0e-98 362.1 224 72.3
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 5.2e-98 361.3 221 72.4
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 6.7e-98 360.9 226 72.6
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 3.3e-97 358.6 223 70.4
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 4.4e-97 358.2 221 73.3
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 4.4e-97 358.2 220 74.1
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 2.2e-96 355.9 221 70.1
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 2.8e-96 355.5 217 72.4
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 2.8e-96 355.5 217 71.0
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 2.8e-96 355.5 214 73.4
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 8.2e-96 354.0 221 71.9
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 3.1e-95 352.1 217 70.5
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 3.5e-94 348.6 226 69.0
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 4.5e-94 348.2 225 70.7
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 7.7e-94 347.4 227 67.8
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.7e-93 346.3 225 70.7
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 1.7e-93 346.3 217 71.9
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 6.5e-93 344.4 226 67.7
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 6.5e-93 344.4 223 69.5
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 1.9e-92 342.8 222 70.3
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 1.9e-92 342.8 218 68.8
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 1.9e-92 342.8 225 68.4
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 2.5e-92 342.4 218 68.8
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 7.2e-92 340.9 219 68.5
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 7.2e-92 340.9 227 68.7
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 7.2e-92 340.9 241 66.0
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 9.4e-92 340.5 221 70.6
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 1.2e-91 340.1 219 68.0
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 1.6e-91 339.7 219 71.7
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 1.6e-91 339.7 221 67.4
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.7e-91 339.0 221 68.8
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 6.1e-91 337.8 221 70.6
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 6.1e-91 337.8 223 66.4
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 1.4e-90 336.7 228 67.1
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 5.2e-90 334.7 221 69.2
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 2.0e-89 332.8 222 66.7
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 4.4e-89 331.6 222 66.2
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 5.7e-89 331.3 212 67.9
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 5.7e-89 331.3 225 65.8
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 9.8e-89 330.5 222 66.7
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 9.8e-89 330.5 222 66.2
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 9.8e-89 330.5 232 65.1
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 1.3e-88 330.1 215 68.8
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.3e-88 330.1 220 66.8
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.7e-88 329.7 222 67.6
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 2.2e-88 329.3 221 67.4
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 2.2e-88 329.3 222 67.6
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 4.8e-88 328.2 223 66.4
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 8.3e-88 327.4 221 66.5
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 8.3e-88 327.4 223 65.9
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.8e-87 326.2 224 67.9
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.8e-87 326.2 267 55.4
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 5.4e-87 324.7 227 66.1
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 7.0e-87 324.3 215 67.9
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 5.9e-86 321.2 228 61.8
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 5.9e-86 321.2 217 63.1
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 7.7e-86 320.9 218 67.0
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 7.7e-86 320.9 218 67.0
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 1.0e-85 320.5 222 64.9
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 8.5e-85 317.4 224 65.6
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 1.1e-84 317.0 219 66.7
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 2.5e-84 315.8 219 66.7
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 4.7e-83 311.6 240 59.6
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 8.0e-83 310.8 233 60.1
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 5.2e-82 308.1 294 51.4
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 3.4e-81 305.4 219 62.1
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 5.7e-81 304.7 259 55.2
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 1.7e-80 303.1 215 63.3
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.8e-80 302.4 189 70.9
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.8e-80 302.4 194 69.1
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 2.4e-79 299.3 191 71.7
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 2.3e-77 292.7 218 58.7
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 9.5e-76 287.3 196 65.8
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 3.0e-74 282.3 191 66.0
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 4.0e-74 282.0 180 68.9
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 1.5e-73 280.0 187 67.9
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 2.6e-73 279.3 191 67.0
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 9.8e-73 277.3 223 61.9
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.3e-72 276.9 187 68.4
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 1.1e-71 273.9 185 64.9
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 1.8e-71 273.1 189 66.1
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 1.8e-71 273.1 189 66.1
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 7.0e-71 271.2 181 66.9
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 1.2e-70 270.4 186 64.0
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 3.5e-70 268.9 181 66.3
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 3.5e-70 268.9 189 65.1
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 5.9e-70 268.1 194 63.4
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 1.0e-69 267.3 181 66.3
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 2.5e-68 262.7 184 62.5
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 4.3e-68 261.9 217 57.6
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.7e-67 258.5 224 58.5
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.7e-67 258.5 220 55.9
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 4.7e-67 258.5 220 55.9
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 6.2e-67 258.1 209 55.5
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 3.1e-66 255.8 182 61.0
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 2.6e-65 252.7 182 60.4
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 3.4e-65 252.3 200 58.5
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 2.3e-61 239.6 191 57.1
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 5.4e-55 218.4 196 50.0
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 1.3e-53 213.8 160 62.5
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 1.5e-52 210.3 140 63.6
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 7.3e-52 208.0 213 46.0
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 7.6e-49 198.0 133 65.4
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 2.3e-37 159.8 81 77.8
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 3.6e-35 152.5 73 82.2
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 2.2e-16 90.1 186 32.8
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 3.2e-07 59.7 61 36.1
CARHR264550 Cardamine hirsuta HOM05D006795 ORTHO05D008573 4.2e-07 59.3 29 79.3
GSVIVG01018488001 Vitis vinifera HOM05D006795 ORTHO05D008573 6.1e-06 55.5 36 52.8


User provided reference genes

Program Settings