Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G148952 Manihot esculenta HOM05D001607 ORTHO05D001893 3.5e-36 154.5 79 100.0
Manes.06G148500 Manihot esculenta HOM05D001607 ORTHO05D001893 2.1e-17 92.0 54 83.3
TWI39G1280 Tripterygium wilfordii HOM05D001607 ORTHO05D001893 3.9e-11 71.2 54 68.5
Potri.012G142200 Populus trichocarpa HOM05D001607 ORTHO05D001893 6.7e-11 70.5 54 68.5
MD01G1203100 Malus domestica HOM05D001607 ORTHO05D001893 3.3e-10 68.2 55 61.8
Eucgr.A02778 Eucalyptus grandis HOM05D001607 ORTHO05D001893 5.6e-10 67.4 54 64.8
Sabra12G0106800 Salix brachista HOM05D001607 ORTHO05D001893 9.6e-10 66.6 54 66.7
Duzib068G0651 Durio zibethinus HOM05D001607 ORTHO05D001893 1.3e-09 66.2 53 69.8
Prupe.2G295900 Prunus persica HOM05D001607 ORTHO05D001893 1.3e-09 66.2 55 61.8
RcHm_v2.0_Chr1g0377641 Rosa chinensis HOM05D001607 ORTHO05D001893 1.3e-09 66.2 55 61.8
Gohir.D11G009700 Gossypium hirsutum HOM05D001607 ORTHO05D001893 2.1e-09 65.5 57 63.2
Gorai.007G011200 Gossypium raimondii HOM05D001607 ORTHO05D001893 2.1e-09 65.5 57 63.2
FvH4_7g29630 Fragaria vesca HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
FAN03G1039 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
FAN03G1056 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
FAN06G1924 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
FAN06G4239 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
FAN10G1529 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
FAN10G2541 Fragaria x ananassa HOM05D001607 ORTHO05D001893 3.7e-09 64.7 55 61.8
Gohir.A11G010500 Gossypium hirsutum HOM05D001607 ORTHO05D001893 4.8e-09 64.3 57 61.4
Gohir.D08G110724 Gossypium hirsutum HOM05D001607 ORTHO05D001893 8.1e-09 63.5 56 62.5
Gorai.004G118300 Gossypium raimondii HOM05D001607 ORTHO05D001893 8.1e-09 63.5 56 62.5
THA.LOC104812206 Tarenaya hassleriana HOM05D001607 ORTHO05D001893 8.1e-09 63.5 57 56.1
CSS0006931 Camellia sinensis var. sinensis HOM05D001607 ORTHO05D001893 1.4e-08 62.8 54 59.3
CARHR227400 Cardamine hirsuta HOM05D001607 ORTHO05D001893 1.8e-08 62.4 64 54.7
FAN01G0648 Fragaria x ananassa HOM05D001607 ORTHO05D001893 1.8e-08 62.4 55 60.0
TAR375G0166 Trochodendron aralioides HOM05D001607 ORTHO05D001893 2.4e-08 62.0 54 61.1
Carub.0007s2059 Capsella rubella HOM05D001607 ORTHO05D001893 4.0e-08 61.2 64 53.1
Cpa.g.sc107.66 Carica papaya HOM05D001607 ORTHO05D001893 4.0e-08 61.2 56 58.9
COL.COLO4_14332 Corchorus olitorius HOM05D001607 ORTHO05D001893 4.0e-08 61.2 57 57.9
Gohir.A08G099300 Gossypium hirsutum HOM05D001607 ORTHO05D001893 4.0e-08 61.2 58 62.1
GSVIVG01028929001 Vitis vinifera HOM05D001607 ORTHO05D001893 4.0e-08 61.2 54 57.4
C01p14680 Brassica napus HOM05D001607 ORTHO05D001893 5.3e-08 60.8 55 60.0
BolC1t01419H Brassica oleracea HOM05D001607 ORTHO05D001893 5.3e-08 60.8 55 60.0
PSO478G2555 Papaver somniferum HOM05D001607 ORTHO05D001893 5.3e-08 60.8 38 73.7
Sp7g18940 Schrenkiella parvula HOM05D001607 ORTHO05D001893 5.3e-08 60.8 66 50.0
PGR042G0514 Punica granatum HOM05D001607 ORTHO05D001893 6.9e-08 60.5 54 59.3
Aa31LG6G2920 Aethionema arabicum HOM05D001607 ORTHO05D001893 9.0e-08 60.1 67 50.7
BraA01t01171Z Brassica rapa HOM05D001607 ORTHO05D001893 9.0e-08 60.1 59 55.9
PSO782G3230 Papaver somniferum HOM05D001607 ORTHO05D001893 9.0e-08 60.1 37 75.7
AL7G33300 Arabidopsis lyrata HOM05D001607 ORTHO05D001893 1.2e-07 59.7 63 52.4
BcaC09g51300 Brassica carinata HOM05D001607 ORTHO05D001893 1.2e-07 59.7 55 58.2
CiPaw.04G071800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.2e-07 59.7 54 59.3
Thhalv10024222m.g Eutrema salsugineum HOM05D001607 ORTHO05D001893 1.2e-07 59.7 65 50.8
Actinidia25880 Actinidia chinensis HOM05D001607 ORTHO05D001893 1.5e-07 59.3 54 59.3
A01p12270 Brassica napus HOM05D001607 ORTHO05D001893 1.5e-07 59.3 59 55.9
CANSAT21G1423 Cannabis sativa HOM05D001607 ORTHO05D001893 1.5e-07 59.3 36 75.0
VMungo0464G1130 Vigna mungo HOM05D001607 ORTHO05D001893 2.0e-07 58.9 56 58.9
Potri.015G145300 Populus trichocarpa HOM05D001607 ORTHO05D001893 2.6e-07 58.5 54 59.3
GSVIVG01020947001 Vitis vinifera HOM05D001607 ORTHO05D001893 2.6e-07 58.5 51 56.9
Atru.chr1.433 Acer truncatum HOM05D001607 ORTHO05D001893 3.4e-07 58.2 44 68.2
Lj1A999G29 Lonicera japonica HOM05D001607 ORTHO05D001893 3.4e-07 58.2 54 57.4
MD07G1272600 Malus domestica HOM05D001607 ORTHO05D001893 3.4e-07 58.2 55 54.5
Glyma.09G137300 Glycine max HOM05D001607 ORTHO05D001893 4.5e-07 57.8 56 53.6
Nn1g01507 Nelumbo nucifera HOM05D001607 ORTHO05D001893 4.5e-07 57.8 38 71.1
Cfa022712 Carpinus fangiana HOM05D001607 ORTHO05D001893 5.8e-07 57.4 54 57.4
Haze_13673 Corylus avellana HOM05D001607 ORTHO05D001893 5.8e-07 57.4 54 57.4
QL09p013733 Quercus lobata HOM05D001607 ORTHO05D001893 5.8e-07 57.4 38 71.1
QL93p1997_0001 Quercus lobata HOM05D001607 ORTHO05D001893 5.8e-07 57.4 38 71.1
Lsat_1_v5_gn_8_8420 Lactuca sativa HOM05D001607 ORTHO05D001893 7.6e-07 57.0 54 59.3
Lj2g0000053 Lotus japonicus HOM05D001607 ORTHO05D001893 7.6e-07 57.0 57 54.4
SalBow4G1573 Salvia bowleyana HOM05D001607 ORTHO05D001893 7.6e-07 57.0 38 68.4
AT4G20850 Arabidopsis thaliana HOM05D001607 ORTHO05D001893 9.9e-07 56.6 64 51.6
BcaNung04146 Brassica carinata HOM05D001607 ORTHO05D001893 9.9e-07 56.6 60 51.7
A03p52520 Brassica napus HOM05D001607 ORTHO05D001893 9.9e-07 56.6 66 50.0
BraA03t14327Z Brassica rapa HOM05D001607 ORTHO05D001893 9.9e-07 56.6 66 50.0
Thecc.03G178600 Theobroma cacao HOM05D001607 ORTHO05D001893 9.9e-07 56.6 55 54.5
CiPaw.03G107800 Carya illinoinensis HOM05D001607 ORTHO05D001893 1.3e-06 56.2 54 63.0
Duzib205G1855 Durio zibethinus HOM05D001607 ORTHO05D001893 1.3e-06 56.2 49 61.2
SGA_v2.0_scaffold44G16733 Striga asiatica HOM05D001607 ORTHO05D001893 1.3e-06 56.2 42 64.3
Dinv28425 Davidia involucrata HOM05D001607 ORTHO05D001893 1.7e-06 55.8 38 68.4
Oeu045396.1 Olea europaea HOM05D001607 ORTHO05D001893 1.7e-06 55.8 38 65.8
Phvul.004G114200 Phaseolus vulgaris HOM05D001607 ORTHO05D001893 1.7e-06 55.8 59 52.5
GSVIVG01020954001 Vitis vinifera HOM05D001607 ORTHO05D001893 1.7e-06 55.8 51 54.9
Actinidia34121 Actinidia chinensis HOM05D001607 ORTHO05D001893 2.2e-06 55.5 35 71.4
Nitab4.5_0001842g0120 Nicotiana tabacum HOM05D001607 ORTHO05D001893 2.2e-06 55.5 54 53.7
Rhsim03G0187200 Rhododendron simsii HOM05D001607 ORTHO05D001893 2.2e-06 55.5 36 66.7
Ciclev10004167m.g Citrus clementina HOM05D001607 ORTHO05D001893 2.9e-06 55.1 54 57.4
ATR0680G301 Amborella trichopoda HOM05D001607 ORTHO05D001893 3.8e-06 54.7 35 71.4
Migut.F00330 Erythranthe guttata HOM05D001607 ORTHO05D001893 4.9e-06 54.3 38 65.8
Psat0s3405g0040 Pisum sativum HOM05D001607 ORTHO05D001893 4.9e-06 54.3 67 44.8
Aqoxy1G00239 Aquilegia oxysepala HOM05D001607 ORTHO05D001893 6.4e-06 53.9 31 80.6
Sopen03g004450 Solanum pennellii HOM05D001607 ORTHO05D001893 8.4e-06 53.5 54 53.7
vmacro06666 Vaccinium macrocarpon HOM05D001607 ORTHO05D001893 8.4e-06 53.5 51 58.8


User provided reference genes

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