Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 0.0e+00 1396.7 730 100.0
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 2.3e-267 925.6 740 71.4
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.0e-211 738.8 761 60.6
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 6.4e-209 731.5 757 58.5
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 9.3e-208 727.6 734 61.9
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 2.1e-207 726.5 736 60.7
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 9.6e-189 664.5 740 55.4
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.3e-188 664.1 765 56.6
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.1e-173 614.4 635 59.7
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 2.6e-165 586.6 737 53.1
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 9.7e-165 584.7 767 51.4
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.5e-160 570.1 768 50.5
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 3.6e-159 566.2 748 52.4
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 3.0e-150 536.6 766 48.7
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 3.1e-147 526.6 746 47.3
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.1e-144 518.1 791 48.4
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.1e-143 512.3 631 53.2
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 1.9e-136 490.7 747 48.6
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 6.1e-135 485.7 787 45.6
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 8.9e-134 481.9 782 45.1
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.8e-132 476.9 734 46.7
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 2.8e-132 476.9 773 46.1
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 4.9e-132 476.1 734 47.1
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.4e-131 474.6 780 45.5
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 9.2e-131 471.9 733 46.8
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 1.6e-130 471.1 755 48.1
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 2.9e-129 466.8 762 44.6
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 6.1e-127 459.1 744 45.6
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.8e-126 457.6 752 46.5
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.1e-126 456.8 746 46.8
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.2e-125 454.9 812 42.9
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.0e-125 454.1 749 46.3
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.6e-125 453.8 746 46.5
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 7.5e-125 452.2 746 46.4
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.3e-124 451.4 760 45.9
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 2.4e-123 447.2 716 46.9
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 3.0e-121 440.3 767 45.9
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.9e-120 437.6 773 44.1
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.8e-119 433.7 822 41.1
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 8.0e-119 432.2 741 44.4
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 9.8e-117 425.2 761 43.9
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.4e-115 420.6 819 42.4
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.4e-115 419.5 785 43.2
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.3e-113 414.8 769 41.5
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.1e-112 411.8 787 43.2
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 9.5e-112 408.7 775 43.6
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 2.1e-111 407.5 756 43.5
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.1e-110 403.7 772 42.9
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 8.9e-110 402.1 764 43.8
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 5.8e-109 399.4 514 52.7
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 2.2e-108 397.5 750 41.7
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.9e-107 394.4 776 42.0
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 1.3e-105 388.3 794 40.4
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.7e-105 387.9 752 41.0
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 5.1e-105 386.3 791 40.8
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 1.1e-104 385.2 744 41.9
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 7.3e-104 382.5 731 41.9
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.4e-102 377.5 774 40.1
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 2.4e-102 377.5 651 45.3
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 6.8e-102 375.9 738 42.3
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 2.9e-100 370.5 775 40.0
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 1.4e-99 368.2 774 40.7
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.3e-97 360.9 756 40.6
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 5.1e-97 359.8 754 40.6
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 5.1e-97 359.8 778 38.6
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 4.3e-96 356.7 786 38.9
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 7.3e-96 355.9 727 41.8
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 6.2e-95 352.8 733 39.4
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 1.2e-93 348.6 742 39.9
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 5.8e-93 346.3 776 39.8
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 8.4e-92 342.4 751 39.8
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 1.1e-91 342.0 751 39.7
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.9e-91 341.3 763 39.3
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.0e-89 335.5 755 39.3
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 3.9e-89 333.6 765 39.6
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 8.7e-89 332.4 768 39.5
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.3e-88 330.1 734 38.0
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 5.6e-88 329.7 764 40.3
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.4e-86 325.1 757 38.8
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.1e-86 323.9 759 39.7
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 6.9e-86 322.8 763 38.4
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 2.2e-84 317.8 766 38.5
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.8e-84 317.0 764 38.9
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 3.2e-83 313.9 741 38.1
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 3.2e-83 313.9 783 36.4
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.2e-82 312.0 741 35.2
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 3.0e-81 307.4 735 36.3
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 8.7e-81 305.8 723 37.3
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 8.7e-81 305.8 759 36.4
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.3e-79 302.0 728 37.9
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.8e-79 300.8 756 38.0
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 2.8e-79 300.8 495 49.3
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.8e-78 298.1 632 40.3
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 2.4e-78 297.7 670 38.7
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.9e-76 290.0 708 38.1
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 4.2e-75 287.0 636 40.6
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 7.9e-74 282.7 731 36.0
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.1e-72 278.9 719 35.5
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 1.9e-72 278.1 595 37.3
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 2.5e-72 277.7 741 37.0
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 5.6e-72 276.6 765 35.9
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 3.1e-70 270.8 736 35.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.0e-69 268.1 762 33.7
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 2.2e-68 264.6 733 36.8
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 5.5e-67 260.0 690 37.4
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 5.5e-67 260.0 697 36.7
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 7.1e-67 259.6 731 34.5
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.9e-65 253.8 761 32.3
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 8.7e-65 252.7 772 33.7
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 1.8e-62 245.0 765 32.3
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.2e-61 242.3 682 35.0
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 4.5e-61 240.4 707 33.2
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 5.9e-61 240.0 735 33.2
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 3.3e-56 224.2 740 32.8
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 6.9e-54 216.5 708 33.5
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 1.9e-51 208.4 307 51.1
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 3.2e-51 207.6 704 32.5
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.2e-50 205.7 702 34.0
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 2.7e-50 204.5 666 31.2
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 7.9e-50 203.0 747 31.7
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.4e-49 202.2 681 32.7
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.8e-47 193.7 759 32.0
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.8e-44 184.1 738 32.0
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.1e-43 182.6 707 30.4
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 2.3e-41 174.9 699 29.2
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 3.1e-38 164.5 703 29.7
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 4.1e-38 164.1 577 33.1
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 1.6e-37 162.2 787 28.7
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 2.0e-37 161.8 199 54.8
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 1.3e-36 159.1 770 27.8
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.1e-35 156.0 312 38.8
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 3.6e-34 151.0 770 28.8
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 6.8e-33 146.7 814 29.4
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 1.2e-32 146.0 189 49.2
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 9.7e-32 142.9 554 33.0
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 2.0e-29 135.2 464 33.8
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 1.0e-28 132.9 464 33.6
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 2.9e-28 131.3 542 32.5
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.9e-28 131.3 272 43.0
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 2.1e-26 125.2 413 33.7
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 8.0e-26 123.2 462 32.7
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.8e-25 122.1 713 27.8
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.8e-25 122.1 472 32.8
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 9.8e-24 116.3 247 36.4
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-22 112.8 128 56.2
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 1.8e-22 112.1 574 29.1
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 9.1e-22 109.8 128 55.5
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 3.5e-21 107.8 493 29.8
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 7.7e-21 106.7 441 31.7
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 3.8e-20 104.4 519 29.1
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 3.8e-20 104.4 447 30.2
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 6.6e-20 103.6 312 35.3
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 8.6e-20 103.2 447 30.0
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 1.1e-19 102.8 245 34.3
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.5e-19 102.4 340 36.2
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 1.5e-19 102.4 181 32.6
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.2e-18 99.4 324 33.6
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 1.4e-17 95.9 334 31.4
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 4.0e-17 94.4 231 34.2
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 4.4e-16 90.9 341 33.4
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 4.4e-16 90.9 337 32.3
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 4.4e-16 90.9 757 23.4
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 7.5e-16 90.1 342 31.6
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 4.9e-15 87.4 648 28.1
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 1.1e-14 86.3 335 31.0
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.2e-13 82.8 811 26.6
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 1.2e-13 82.8 757 23.1
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.6e-13 82.4 337 31.2
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.6e-13 82.4 337 31.2
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 1.0e-12 79.7 530 26.0
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 8.6e-12 76.6 294 33.7
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 4.3e-11 74.3 498 27.7
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 4.3e-11 74.3 276 36.2
Zm00001eb418620 Zea mays HOM05D003765 ORTHO05D004561 1.2e-10 72.8 572 25.5
Duzib205G0479 Durio zibethinus HOM05D003765 ORTHO05D004561 3.1e-09 68.2 108 46.3
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 4.0e-09 67.8 179 28.5
Os04g0106500 Oryza sativa ssp. japonica HOM05D003765 ORTHO05D004561 6.8e-09 67.0 651 25.3
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 3.4e-08 64.7 212 25.9
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 4.4e-08 64.3 187 26.2
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 5.8e-08 63.9 181 26.5
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 1.9e-06 58.9 177 27.7
Mapoly0001s0174 Marchantia polymorpha HOM05D002515 ORTHO05D002722 7.0e-06 57.0 106 34.0
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 7.0e-06 57.0 184 27.2


User provided reference genes

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