Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1885.5 988 100.0
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1436.8 1003 73.5
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1382.9 997 72.0
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1373.6 984 72.7
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1358.2 1013 71.3
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1340.9 950 71.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1338.6 946 74.3
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1323.5 977 72.8
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1322.0 1004 69.6
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1315.4 1025 67.4
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1303.5 1000 67.6
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1302.7 1017 68.5
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1299.6 1008 69.1
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1273.1 999 65.6
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1272.3 926 71.1
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1268.1 1025 67.6
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1265.0 966 67.3
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1251.5 1010 65.7
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1247.6 1010 66.3
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1245.0 969 69.8
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1235.3 931 68.5
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1233.4 964 67.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 0.0e+00 1230.7 1002 66.5
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1226.5 958 67.6
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1226.5 958 67.7
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1217.2 959 66.8
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1213.7 968 65.9
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1211.1 1010 65.0
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1209.5 1007 64.5
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1207.6 1015 63.5
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1206.0 1011 64.1
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1196.4 1008 63.3
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1194.5 981 64.4
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1177.2 950 65.7
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 0.0e+00 1176.8 1043 62.4
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 0.0e+00 1144.8 923 65.9
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1144.0 1033 62.2
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 0.0e+00 1136.7 975 64.1
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1135.9 997 61.3
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 0.0e+00 1134.8 977 62.4
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1117.4 1026 59.4
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1115.5 1025 59.1
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1110.5 1026 59.3
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1107.8 1027 58.8
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 0.0e+00 1105.5 820 68.7
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 0.0e+00 1103.6 974 60.2
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1103.6 820 68.3
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 0.0e+00 1103.2 820 68.5
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 0.0e+00 1102.0 949 62.7
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 0.0e+00 1098.2 999 63.1
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1096.3 997 59.9
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 0.0e+00 1092.4 964 62.3
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 0.0e+00 1080.1 957 61.0
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.1e-309 1066.6 1009 60.9
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 5.7e-309 1064.3 956 60.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 2.8e-308 1062.0 983 61.2
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 8.2e-308 1060.4 967 59.0
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 2.0e-306 1055.8 826 64.5
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 7.6e-306 1053.9 964 63.6
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 7.6e-306 1053.9 974 60.5
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.5e-304 1048.9 950 59.9
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.7e-303 1045.4 832 65.4
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.8e-302 1042.7 952 59.0
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.9e-301 1039.3 995 58.4
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.1e-299 1033.5 938 60.3
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 2.4e-299 1032.3 998 58.2
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.0e-299 1030.4 687 74.7
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 1.2e-298 1030.0 978 59.6
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 1.5e-298 1029.6 964 59.6
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 2.9e-297 1025.4 952 59.7
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 5.0e-297 1024.6 949 61.2
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 9.7e-293 1010.4 1039 55.7
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 5.0e-289 998.0 829 61.6
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 3.1e-283 978.8 1032 56.6
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 5.5e-280 968.0 1040 53.6
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 5.0e-273 944.9 848 58.8
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 7.7e-266 921.0 990 51.8
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 5.0e-265 918.3 961 52.9
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.9e-264 916.4 1010 51.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 2.1e-263 912.9 989 51.3
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.4e-261 905.6 767 60.6
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 5.7e-261 904.8 992 53.4
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.7e-260 903.3 960 52.0
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.7e-260 903.3 960 52.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 2.8e-260 902.5 958 51.9
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 6.3e-260 901.4 968 53.1
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 3.5e-258 895.6 882 54.9
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 3.3e-256 889.0 891 54.9
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 1.2e-253 880.6 983 51.4
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.2e-253 880.6 983 51.4
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 9.8e-253 877.5 789 58.9
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 1.1e-251 874.0 983 52.6
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 1.6e-250 870.2 983 52.4
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 5.0e-249 865.1 958 50.3
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 1.9e-248 863.2 983 50.3
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 7.3e-248 861.3 814 54.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 1.3e-244 850.5 756 59.7
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.7e-244 849.0 530 76.8
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.8e-239 832.8 537 73.0
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.3e-238 829.7 541 73.4
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.3e-236 823.9 983 50.6
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.5e-224 783.9 967 47.7
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 2.2e-212 743.4 605 59.7
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 6.9e-206 721.8 634 59.3
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 1.4e-166 591.3 393 73.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 1.5e-152 544.7 467 56.5
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 3.8e-148 530.0 648 48.0
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 5.9e-133 479.6 505 59.0
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 5.2e-129 466.5 410 56.8
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 4.0e-97 360.5 422 55.9
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.3e-83 314.3 439 44.6
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.9e-78 298.5 315 50.2
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.3e-55 222.6 745 28.7
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 6.3e-50 203.8 156 62.8
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 7.0e-49 200.3 281 47.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.6e-45 189.1 452 32.7
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.6e-45 189.1 452 32.7
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.0e-44 186.4 452 32.7
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.7e-43 180.6 189 52.4
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 7.5e-43 180.3 378 34.4
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 7.5e-35 153.7 488 28.9
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.7e-32 145.2 391 30.9
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 5.5e-30 137.5 336 30.1
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.4e-17 96.3 358 26.5
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.0e-16 92.4 301 27.2
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 5.0e-15 87.8 76 57.9
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.6e-13 82.8 161 31.7
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.3e-12 79.0 75 57.3
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 3.5e-08 65.1 63 63.5
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 7.8e-08 63.9 87 39.1
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.3e-07 62.4 155 29.0
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 8.6e-07 60.5 131 29.0
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 1.1e-06 60.1 134 27.6
vmacro03493 Vaccinium macrocarpon HOM05D003725 ORTHO05D004294 1.9e-06 59.3 109 35.8
CAN.G675.10 Capsicum annuum HOM05D003725 ORTHO05D004294 2.5e-06 58.9 132 29.5
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.5e-06 58.9 342 22.2
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 2.5e-06 58.9 132 28.8
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 2.5e-06 58.9 132 28.8
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 2.5e-06 58.9 131 29.0
Nn4g24804 Nelumbo nucifera HOM05D003725 ORTHO05D004294 2.5e-06 58.9 79 34.2
Sed0027950 Sechium edule HOM05D002537 ORTHO05D002751 2.5e-06 58.9 78 38.5
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 4.3e-06 58.2 72 38.9
Zm00001eb180800 Zea mays HOM05D002537 ORTHO05D002751 4.3e-06 58.2 113 32.7
Haze_06001 Corylus avellana HOM05D003725 ORTHO05D004294 5.6e-06 57.8 188 23.4
Nitab4.5_0007658g0010 Nicotiana tabacum HOM05D002537 ORTHO05D002751 5.6e-06 57.8 171 29.8
Nitab4.5_0011847g0030 Nicotiana tabacum HOM05D003725 ORTHO05D004294 5.6e-06 57.8 128 29.7
PGSC0003DMG400012915 Solanum tuberosum HOM05D003725 ORTHO05D004294 5.6e-06 57.8 123 30.9
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 7.3e-06 57.4 119 29.4
Solyc02g030460.2 Solanum lycopersicum HOM05D003725 ORTHO05D004294 7.3e-06 57.4 114 31.6
Ah.02g131450 Amaranthus hybridus HOM05D002537 ORTHO05D002751 9.5e-06 57.0 93 34.4
Aqoxy1G00445 Aquilegia oxysepala HOM05D002537 ORTHO05D002751 9.5e-06 57.0 108 30.6
Sopen02g009780 Solanum pennellii HOM05D003725 ORTHO05D004294 9.5e-06 57.0 114 30.7
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 9.5e-06 57.0 72 36.1


User provided reference genes

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