Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 7.2e-130 467.2 232 100.0
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 6.1e-97 357.8 233 76.4
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.3e-96 355.9 230 77.0
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.4e-95 352.1 228 77.2
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 9.8e-95 350.5 234 74.8
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.9e-94 348.2 224 73.7
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 4.9e-94 348.2 234 75.2
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 8.3e-94 347.4 227 73.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 7.0e-93 344.4 232 73.7
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 9.2e-93 344.0 233 73.4
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.0e-92 342.8 232 70.3
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 4.5e-92 341.7 230 73.9
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 4.5e-92 341.7 230 71.7
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 5.9e-92 341.3 232 69.8
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.0e-91 340.5 233 73.8
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.5e-90 335.9 232 69.8
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 4.3e-90 335.1 233 74.7
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 5.6e-90 334.7 233 73.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 9.5e-90 334.0 239 71.1
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.2e-89 333.6 232 72.0
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.1e-89 332.8 235 71.9
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.4e-88 330.1 233 68.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.8e-88 329.7 209 78.0
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 1.8e-88 329.7 229 71.2
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 8.9e-88 327.4 234 70.5
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 3.7e-86 322.0 229 72.9
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 3.7e-86 322.0 232 69.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 4.9e-86 321.6 233 67.4
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 8.3e-86 320.9 229 69.0
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 7.0e-85 317.8 229 68.6
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.6e-84 316.6 232 67.7
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.0e-84 316.2 222 70.7
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 4.6e-84 315.1 234 67.5
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 5.9e-84 314.7 232 70.3
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 5.9e-84 314.7 233 68.7
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 7.8e-84 314.3 232 67.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.0e-83 313.9 227 67.8
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 3.0e-83 312.4 232 68.1
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.9e-83 312.0 234 68.4
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 6.6e-83 311.2 223 70.9
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 8.6e-83 310.8 227 67.0
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.9e-82 309.7 230 65.7
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.5e-82 309.3 227 67.0
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.8e-81 305.8 230 68.3
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.8e-81 305.8 229 65.9
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.3e-80 302.8 227 63.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 5.2e-80 301.6 229 66.4
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.6e-79 299.3 233 67.0
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 3.4e-79 298.9 229 65.1
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 7.5e-79 297.7 227 63.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 2.9e-78 295.8 225 67.1
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.9e-77 293.1 246 60.2
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.2e-77 292.4 232 62.1
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.2e-77 292.4 232 62.1
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 4.1e-77 292.0 233 65.2
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 5.4e-77 291.6 233 63.9
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 1.2e-76 290.4 229 65.1
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.6e-76 290.0 231 65.4
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 3.5e-76 288.9 224 64.7
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.7e-75 286.6 229 62.9
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 2.3e-75 286.2 232 62.9
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 3.0e-75 285.8 232 63.8
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 3.0e-75 285.8 230 63.9
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 8.6e-75 284.3 234 61.5
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 1.5e-74 283.5 232 60.8
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 1.5e-74 283.5 231 62.3
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 5.6e-74 281.6 211 65.4
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 3.6e-73 278.9 227 63.4
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 6.2e-73 278.1 285 52.6
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 8.1e-73 277.7 233 63.1
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.8e-72 276.6 231 60.2
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 2.3e-72 276.2 230 61.7
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 4.0e-72 275.4 232 61.6
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 1.5e-71 273.5 232 60.8
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.6e-71 272.7 234 63.7
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.6e-71 272.7 236 62.7
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 3.4e-71 272.3 231 59.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 9.9e-71 270.8 229 60.3
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-70 270.4 232 60.8
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 2.2e-70 269.6 234 61.1
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.4e-69 266.9 232 60.8
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.4e-69 266.9 232 60.3
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.4e-69 266.9 234 59.0
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 3.2e-69 265.8 231 59.7
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 4.1e-69 265.4 240 58.3
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 4.1e-69 265.4 228 59.6
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 4.1e-69 265.4 233 59.7
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 9.2e-69 264.2 231 59.3
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 2.1e-68 263.1 240 60.4
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 7.8e-68 261.2 231 59.3
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.3e-67 260.4 214 62.1
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 3.9e-67 258.8 210 59.5
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 8.6e-67 257.7 225 60.0
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.5e-66 256.9 237 57.8
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 1.9e-66 256.5 246 56.1
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.4e-64 250.4 202 61.9
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 2.4e-64 249.6 234 56.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.5e-63 246.9 203 62.6
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 7.6e-63 244.6 280 51.4
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 7.8e-60 234.6 232 55.6
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.0e-59 232.6 177 65.5
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.2e-57 227.3 232 55.2
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.8e-57 226.1 232 55.2
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 4.7e-57 225.3 170 68.8
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.1e-53 214.2 157 68.2
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 7.1e-53 211.5 238 49.2
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.9e-50 203.4 235 51.1
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 4.8e-49 198.7 216 51.9
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 7.6e-47 191.4 269 44.6
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 9.3e-45 184.5 191 52.4
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 6.0e-44 181.8 223 44.8
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 6.7e-43 178.3 134 63.4
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 1.1e-40 171.0 228 44.7
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 2.4e-40 169.9 225 45.3
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 6.9e-40 168.3 140 62.9
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.6e-39 166.4 180 49.4
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.8e-38 162.5 237 43.5
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.9e-37 160.2 130 61.5
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 4.2e-37 159.1 93 77.4
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 6.0e-36 155.2 236 41.5
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.3e-35 154.1 215 44.2
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.3e-33 147.5 124 62.1
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.4e-31 139.4 92 69.6
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.6e-28 130.6 136 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 7.9e-28 128.3 142 52.1
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.1e-26 124.4 93 62.4
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 7.4e-26 121.7 98 58.2
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.5e-23 112.5 134 52.2
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 4.6e-20 102.4 227 33.0
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 1.8e-19 100.5 175 36.6
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 2.3e-19 100.1 115 47.8
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 6.7e-19 98.6 109 48.6
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.3e-18 96.3 135 42.2
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 8.2e-17 91.7 76 60.5
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 1.1e-16 91.3 73 56.2
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 4.7e-12 75.9 183 31.1
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 6.1e-12 75.5 103 41.7
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 3.0e-11 73.2 53 60.4
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 6.3e-09 65.5 97 42.3
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.1e-08 64.7 87 44.8
BolC2t12268H Brassica oleracea HOM05D005662 ORTHO05D007004 1.2e-07 61.2 56 53.6
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 3.8e-06 56.2 60 55.0


User provided reference genes

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