Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 1.2e-258 896.0 458 100.0
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 6.7e-188 661.0 461 77.7
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.5e-187 659.8 458 76.4
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.4e-185 652.5 470 77.2
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.3e-183 646.7 458 75.1
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 5.0e-183 644.8 457 76.8
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.2e-181 640.2 461 74.8
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 7.9e-181 637.5 458 74.7
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.3e-180 636.7 456 75.0
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.5e-179 633.3 444 76.4
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 4.3e-179 631.7 448 77.7
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.1e-177 625.5 425 78.8
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 9.1e-177 624.0 443 77.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.9e-175 619.0 424 76.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.0e-175 618.2 444 73.6
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 6.5e-175 617.8 427 76.6
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.9e-174 616.3 433 75.3
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 5.5e-174 614.8 455 71.9
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.8e-172 609.8 459 73.0
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.8e-172 609.8 425 75.5
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 3.9e-172 608.6 449 73.5
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 9.7e-171 604.0 445 72.1
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 9.7e-171 604.0 442 72.2
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.7e-170 602.1 451 72.3
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 4.1e-169 598.6 439 74.3
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.9e-169 597.8 422 77.0
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.9e-169 597.8 422 77.0
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.4e-168 595.5 425 75.8
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.3e-167 593.6 431 71.9
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.2e-167 592.8 440 72.3
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.8e-167 592.0 422 77.0
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.1e-166 590.5 423 72.8
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 2.5e-166 589.3 453 70.0
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 3.2e-166 589.0 478 68.8
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 4.2e-166 588.6 464 69.6
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 7.2e-166 587.8 417 75.1
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-165 586.6 453 71.3
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 3.6e-165 585.5 450 70.4
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.6e-165 585.5 439 72.7
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.8e-164 583.2 456 70.6
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.8e-164 583.2 450 69.8
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 5.2e-164 581.6 441 72.3
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 8.8e-164 580.9 451 71.0
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.6e-163 579.3 464 68.3
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 5.7e-163 578.2 469 68.0
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 3.7e-162 575.5 455 70.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 4.8e-162 575.1 440 70.9
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.1e-161 573.9 458 68.8
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.3e-161 571.6 453 70.0
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.3e-161 571.6 453 70.0
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 7.0e-161 571.2 412 73.8
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.2e-160 570.5 464 68.3
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.2e-160 570.5 464 68.3
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.5e-160 568.9 487 64.7
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 4.5e-160 568.5 425 71.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 5.9e-160 568.2 457 68.3
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-159 566.6 425 71.1
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 2.9e-159 565.8 439 70.6
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 6.5e-159 564.7 441 69.6
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 8.5e-159 564.3 445 68.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.1e-158 563.9 418 72.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.5e-158 563.5 511 62.4
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.5e-158 562.8 426 71.4
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.5e-158 562.8 426 71.4
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.5e-158 562.8 460 66.5
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 9.4e-158 560.8 456 69.3
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 6.1e-157 558.1 416 70.0
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 8.0e-157 557.8 479 66.8
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.0e-156 555.8 442 68.6
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.2e-155 553.9 577 57.4
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 2.0e-155 553.1 452 66.6
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.0e-155 553.1 422 69.2
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.6e-155 552.7 484 64.0
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.8e-154 549.3 460 66.5
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.2e-152 543.9 431 69.4
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.6e-152 543.5 454 67.2
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 2.0e-152 543.1 445 68.8
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 7.7e-152 541.2 447 67.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.3e-151 540.4 415 67.7
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.0e-151 538.5 437 66.6
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 3.6e-149 532.3 451 66.3
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.0e-148 530.8 445 66.3
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.8e-148 530.0 449 65.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 5.2e-148 528.5 449 65.5
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 5.2e-148 528.5 449 65.5
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.2e-147 527.3 449 65.3
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 4.4e-147 525.4 449 65.0
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 6.3e-146 521.5 460 63.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 8.3e-146 521.2 437 66.6
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.4e-145 518.5 402 67.9
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 9.1e-145 517.7 435 66.7
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 5.9e-144 515.0 470 63.2
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 6.5e-143 511.5 451 64.7
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 8.6e-143 511.1 450 65.1
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 2.8e-141 506.1 464 62.3
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 6.1e-141 505.0 395 67.8
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 4.9e-138 495.4 449 62.8
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 5.4e-137 491.9 409 62.1
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 5.9e-136 488.4 371 68.7
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.3e-134 482.3 423 64.1
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 4.7e-133 478.8 410 60.7
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.0e-133 478.0 407 63.1
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.0e-132 477.6 410 60.7
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.8e-132 476.9 515 53.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.3e-132 476.5 474 59.5
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.4e-131 472.2 422 64.7
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 9.8e-131 471.1 417 60.9
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 4.9e-130 468.8 385 68.8
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.4e-129 466.5 456 57.7
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 4.6e-128 462.2 459 58.0
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 5.9e-128 461.8 345 75.1
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.1e-126 457.6 378 67.2
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 4.9e-122 442.2 461 56.0
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.4e-122 441.8 422 56.9
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 2.4e-121 439.9 411 60.3
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.0e-120 435.3 415 59.3
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 5.6e-118 428.7 417 57.3
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.8e-116 423.7 370 60.3
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 3.1e-116 422.9 377 61.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.1e-112 410.2 379 58.0
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 6.0e-112 408.7 379 58.0
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.3e-111 407.5 360 61.1
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.1e-110 404.4 388 60.1
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.9e-105 387.1 386 58.5
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 5.6e-102 375.6 374 58.3
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.6e-96 357.5 578 41.2
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 6.2e-93 345.5 347 57.1
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 6.9e-92 342.0 298 65.4
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-91 341.3 404 51.0
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 6.0e-88 328.9 334 56.9
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.1e-85 320.5 326 54.6
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 5.3e-84 315.8 369 49.3
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 8.2e-77 292.0 280 56.8
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 5.3e-76 289.3 316 53.5
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.4e-70 268.9 291 52.9
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 8.2e-69 265.4 303 52.5
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.2e-61 240.7 121 97.5
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.7e-58 231.1 191 64.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.5e-54 218.0 278 51.1
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 3.3e-54 216.9 255 54.9
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.6e-46 190.7 322 35.7
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.3e-45 188.3 242 46.3
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.0e-42 176.4 123 76.4
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.1e-40 171.0 157 66.9
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 9.7e-38 162.2 158 65.2
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.8e-37 160.6 122 78.7
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 3.4e-30 137.1 170 50.6
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 9.8e-30 135.6 114 61.4
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 7.7e-27 125.9 163 49.1
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.9e-25 121.3 155 50.3
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-24 118.6 102 69.6
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.6e-24 117.1 69 78.3
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 2.3e-23 114.4 74 74.3
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.0e-23 113.6 66 87.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 8.9e-23 112.5 93 59.1
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 3.4e-22 110.5 212 40.1
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.9e-21 106.7 58 89.7
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.5e-19 100.1 74 63.5
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 8.6e-18 95.9 51 88.2
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.5e-17 94.4 76 60.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.6e-16 90.5 51 86.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.8e-15 88.2 51 84.3
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.2e-15 86.7 55 78.2
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.2e-14 85.5 81 64.2
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 2.9e-13 80.9 51 78.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 8.3e-13 79.3 81 56.8
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.7e-11 74.3 77 55.8
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 5.6e-09 66.6 81 54.3
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.3e-09 66.2 41 73.2
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 9.5e-09 65.9 84 53.6
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-08 63.9 36 88.9
AagrBONN_evm.TU.Sc2ySwM_368.3378 Anthoceros agrestis HOM05D003179 ORTHO05D003563 8.9e-07 59.3 314 23.9
Nn2g13754 Nelumbo nucifera HOM05D003179 ORTHO05D003563 2.6e-06 57.8 311 23.5
TAR633G1805 Trochodendron aralioides HOM05D003179 ORTHO05D003563 3.4e-06 57.4 349 24.4
Rhsim01G0212600 Rhododendron simsii HOM05D003179 ORTHO05D003563 4.4e-06 57.0 311 22.2
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 9.8e-06 55.8 107 44.9


User provided reference genes

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