Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 7.3e-281 969.9 499 100.0
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.2e-228 795.0 528 80.3
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.4e-215 753.1 527 75.7
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 5.4e-207 724.5 522 73.0
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 5.5e-204 714.5 598 66.6
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.0e-202 708.8 523 72.5
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 5.7e-201 704.5 524 72.1
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.9e-200 701.4 527 71.5
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 4.9e-200 701.4 525 71.2
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.4e-199 699.1 523 70.4
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.3e-197 693.3 523 70.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.9e-197 692.2 528 70.6
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.3e-196 688.3 523 70.7
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 5.2e-194 681.4 519 69.7
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 6.8e-194 681.0 525 69.0
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 5.8e-193 677.9 523 69.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.3e-192 676.8 531 68.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.9e-192 675.6 506 71.1
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.4e-191 672.5 528 67.8
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 3.5e-190 668.7 523 68.1
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.5e-190 668.7 547 66.4
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 1.0e-189 667.2 523 68.5
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 2.3e-189 666.0 524 67.6
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 2.3e-189 666.0 523 67.7
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 3.0e-189 665.6 523 68.1
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 3.9e-189 665.2 523 68.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 2.5e-188 662.5 523 67.1
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 5.6e-188 661.4 524 67.2
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 3.6e-187 658.7 524 67.0
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 6.2e-187 657.9 524 66.8
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 4.0e-186 655.2 524 66.8
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 4.0e-186 655.2 522 67.0
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.6e-185 652.5 523 66.9
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 2.6e-185 652.5 523 66.9
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 5.8e-185 651.4 526 66.2
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 7.5e-185 651.0 524 67.6
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.2e-184 649.4 527 65.7
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 2.9e-184 649.0 523 66.0
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.2e-183 645.6 521 66.2
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 4.1e-183 645.2 521 66.2
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.1e-183 645.2 522 65.7
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 7.1e-183 644.4 523 65.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 2.7e-182 642.5 524 66.0
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.7e-182 642.5 530 64.3
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.8e-182 641.0 523 66.3
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 7.8e-182 641.0 526 65.8
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.7e-181 639.8 529 64.5
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 6.6e-181 637.9 501 66.5
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 8.6e-181 637.5 523 66.0
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.5e-180 636.7 493 70.0
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 3.3e-180 635.6 525 64.2
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 8.1e-179 630.9 525 64.4
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.1e-178 630.6 491 69.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-178 630.2 512 65.8
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 2.6e-177 625.9 483 68.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.1e-175 620.5 454 72.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 1.6e-174 616.7 525 63.6
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 3.3e-172 609.0 528 61.6
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 4.7e-171 605.1 517 64.8
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 4.7e-171 605.1 527 63.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.4e-170 602.8 481 68.6
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 4.0e-170 602.1 636 54.4
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 6.8e-170 601.3 501 64.5
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 9.9e-169 597.4 501 64.7
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 7.8e-166 587.8 525 61.9
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 7.8e-166 587.8 541 59.9
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.3e-165 587.0 541 60.1
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.0e-162 575.5 556 58.1
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 9.9e-161 570.9 530 59.4
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.3e-157 560.5 491 63.5
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 1.8e-154 550.1 454 64.1
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.0e-154 547.7 504 61.7
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.6e-153 546.2 541 57.3
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.8e-152 542.3 419 70.2
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 8.4e-152 541.2 419 69.2
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 5.4e-151 538.5 437 66.8
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 7.1e-151 538.1 554 54.5
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 3.9e-149 532.3 401 71.6
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 1.9e-148 530.0 524 55.9
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.9e-148 530.0 498 60.8
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 7.4e-148 528.1 461 64.2
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 9.6e-148 527.7 427 67.7
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 6.9e-146 521.5 505 57.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 7.6e-145 518.1 579 52.3
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 9.3e-143 511.1 429 65.5
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 8.7e-141 504.6 456 61.4
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 3.3e-140 502.7 583 53.0
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.8e-139 499.6 494 56.5
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.5e-135 486.5 387 67.4
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.5e-135 486.5 470 57.2
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 4.2e-135 485.7 526 52.7
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.5e-132 477.2 570 50.4
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 4.1e-130 469.2 434 60.8
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 6.9e-130 468.4 514 52.5
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 9.0e-130 468.0 521 51.1
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.9e-128 463.0 485 55.3
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 9.4e-127 458.0 458 53.3
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 3.0e-125 453.0 487 54.2
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.7e-123 446.0 476 52.7
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 5.0e-120 435.6 391 63.9
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.1e-117 425.6 437 57.0
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 4.0e-109 399.4 375 59.2
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 5.7e-108 395.6 403 57.3
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 2.7e-102 376.7 495 43.6
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.0e-101 374.8 310 64.8
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 2.7e-97 360.1 527 41.0
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 2.6e-92 343.6 291 63.9
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.6e-89 334.3 341 57.2
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 8.6e-88 328.6 223 75.3
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.8e-82 310.8 520 37.9
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.0e-80 303.5 252 64.3
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.5e-79 300.4 299 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 4.0e-77 293.1 454 40.7
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 5.8e-76 289.3 375 48.5
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.9e-74 284.3 421 42.8
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.6e-71 272.7 202 67.8
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 1.3e-64 251.5 231 60.2
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.3e-63 245.7 496 36.1
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 1.3e-56 224.9 171 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.3e-56 224.2 426 36.6
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 9.6e-55 218.8 190 65.3
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 4.9e-51 206.5 217 59.0
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 6.9e-45 186.0 183 56.8
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.9e-39 167.9 659 26.4
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-38 165.2 159 54.7
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.1e-37 162.2 196 47.4
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.4e-37 161.8 97 84.5
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.1e-30 137.9 161 52.2
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-30 137.9 164 47.6
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-30 137.9 164 47.6
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.3e-29 133.3 86 74.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 2.6e-28 131.0 186 43.5
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 8.4e-27 125.9 106 56.6
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.1e-26 125.6 105 56.2
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 2.5e-26 124.4 429 29.4
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 5.5e-26 123.2 103 66.0
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-25 121.3 122 48.4
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.7e-25 120.9 89 61.8
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.9e-21 106.3 93 66.7
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.6e-20 102.8 62 88.7
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.6e-20 102.8 62 88.7
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.0e-16 92.4 86 64.0
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.0e-16 90.9 123 41.5
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 3.9e-16 90.5 479 26.5
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.5e-15 87.8 155 41.9
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.7e-15 86.7 54 72.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.3e-13 80.1 55 74.5
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 4.5e-12 77.0 73 63.0
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.0e-11 73.6 54 72.2
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.3e-06 56.6 29 93.1


User provided reference genes

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