Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 1.5e-209 732.6 385 100.0
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 4.6e-166 588.2 385 78.4
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 1.7e-160 569.7 385 76.1
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 8.5e-160 567.4 385 75.8
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 3.2e-159 565.5 385 75.1
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 7.2e-159 564.3 385 76.1
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 3.6e-158 562.0 383 75.7
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 2.5e-156 555.8 385 73.8
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 5.7e-156 554.7 386 75.1
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 1.3e-155 553.5 385 73.8
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 2.2e-155 552.7 384 74.2
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 2.8e-155 552.4 413 70.7
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 1.2e-153 547.0 384 73.2
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 1.2e-153 547.0 385 72.7
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 1.5e-153 546.6 385 73.0
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 1.5e-153 546.6 386 73.3
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 1.0e-152 543.9 385 71.7
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 1.7e-152 543.1 440 67.0
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 2.2e-152 542.7 385 73.0
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 2.2e-152 542.7 386 73.3
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 3.8e-152 542.0 385 72.7
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 1.1e-151 540.4 386 72.0
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 1.9e-151 539.7 385 72.5
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 1.9e-151 539.7 389 71.2
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 4.2e-151 538.5 386 71.5
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 9.4e-151 537.3 389 72.0
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 1.6e-150 536.6 385 72.2
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 3.6e-150 535.4 385 72.2
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 4.6e-150 535.0 389 70.7
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 7.9e-150 534.3 385 73.0
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 1.0e-149 533.9 386 71.5
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 1.4e-149 533.5 385 71.7
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 1.4e-149 533.5 384 71.4
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 1.8e-149 533.1 386 71.2
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 2.3e-149 532.7 409 68.5
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 2.3e-149 532.7 385 71.2
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 3.0e-149 532.3 385 71.2
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 3.9e-149 531.9 386 71.2
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 5.1e-149 531.6 438 66.2
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 8.8e-149 530.8 386 72.3
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 8.8e-149 530.8 383 72.8
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.1e-148 530.4 389 71.0
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 1.5e-148 530.0 385 70.9
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 2.0e-148 529.6 386 71.2
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 2.0e-148 529.6 385 70.1
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 5.7e-148 528.1 415 67.5
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 7.4e-148 527.7 405 68.6
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 1.7e-147 526.6 385 70.4
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 1.7e-147 526.6 379 71.8
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 3.7e-147 525.4 383 70.2
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 8.2e-147 524.2 385 69.9
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 1.2e-145 520.4 385 69.9
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.0e-144 517.3 385 69.6
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 1.3e-144 516.9 386 70.2
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 1.7e-144 516.5 385 69.4
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 2.2e-144 516.2 385 68.6
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 5.0e-144 515.0 385 69.9
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 1.4e-143 513.5 410 66.1
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 7.2e-143 511.1 368 72.0
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 9.4e-143 510.8 385 68.3
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 4.7e-142 508.4 395 69.6
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 7.9e-142 507.7 386 67.1
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 3.9e-141 505.4 385 69.1
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 8.8e-141 504.2 382 70.4
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.0e-140 503.1 385 69.4
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 3.3e-140 502.3 385 69.6
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 5.7e-140 501.5 438 63.0
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 9.7e-140 500.7 390 67.9
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 9.7e-140 500.7 385 68.8
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 2.2e-139 499.6 385 68.1
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 2.8e-139 499.2 385 68.1
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 6.3e-139 498.0 385 67.3
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 1.1e-138 497.3 383 67.9
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 1.8e-138 496.5 380 69.5
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.8e-138 496.5 410 65.6
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 9.1e-138 494.2 380 69.2
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 1.2e-137 493.8 380 68.7
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 1.2e-137 493.8 385 68.3
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 1.6e-137 493.4 385 67.8
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 5.9e-137 491.5 380 68.4
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 1.3e-136 490.3 381 67.5
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 3.8e-136 488.8 392 66.1
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 6.5e-136 488.0 380 67.6
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 6.5e-136 488.0 380 67.6
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 1.5e-135 486.9 385 64.9
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 7.2e-135 484.6 386 66.6
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 4.7e-134 481.9 385 65.7
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 8.8e-133 477.6 403 64.3
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 9.7e-132 474.2 388 62.6
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 1.1e-130 470.7 328 72.9
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 7.0e-130 468.0 389 63.5
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 2.0e-129 466.5 388 61.9
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.0e-125 454.1 385 63.9
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.4e-125 453.8 380 61.6
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 4.8e-123 445.3 390 62.1
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 4.8e-123 445.3 331 68.9
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 4.1e-122 442.2 388 59.8
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 7.7e-121 438.0 465 51.8
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 6.3e-115 418.3 276 77.5
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 2.7e-113 412.9 415 56.9
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 6.6e-112 408.3 388 56.2
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 5.6e-111 405.2 388 56.4
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 9.8e-108 394.4 393 55.7
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 1.1e-106 391.0 394 56.3
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 1.7e-104 383.6 277 72.9
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 4.9e-75 285.8 245 62.0
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 3.5e-73 279.6 416 42.1
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 2.1e-65 253.8 456 37.9
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 9.9e-60 235.0 158 73.4
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.4e-58 230.3 158 72.8
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.4e-58 230.3 158 72.2
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 3.3e-55 219.9 339 41.0
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.3e-46 191.4 158 62.7
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.1e-45 188.3 147 66.7
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 3.4e-44 183.3 140 63.6
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.9e-39 167.5 129 64.3
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 9.1e-37 158.7 126 64.3
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 2.9e-35 153.7 109 71.6
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 4.4e-31 139.8 108 61.1
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.5e-26 124.0 95 65.3
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 9.4e-26 122.1 109 57.8
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 1.5e-23 114.8 85 69.4
SEGI_06793 Sequoiadendron giganteum HOM05D002866 ORTHO05D014815 1.3e-11 75.1 124 36.3
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 2.7e-09 67.4 39 84.6
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 6.1e-09 66.2 39 82.1


User provided reference genes

Program Settings