Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.1e-104 382.5 207 100.0
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 5.9e-83 311.2 201 80.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 1.3e-82 310.1 202 79.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 2.9e-82 308.9 203 77.3
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.4e-81 306.6 203 84.7
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 2.5e-81 305.8 216 73.6
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 5.5e-81 304.7 201 77.6
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 7.9e-80 300.8 203 74.9
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.4e-79 300.1 202 79.7
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.8e-79 299.7 203 74.9
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 5.1e-79 298.1 203 74.9
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 6.7e-79 297.7 199 74.9
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 8.8e-79 297.4 203 81.8
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.1e-78 297.0 197 74.1
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 7.4e-78 294.3 199 78.9
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 9.7e-78 293.9 200 78.5
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 9.7e-78 293.9 210 75.2
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.2e-77 292.7 202 72.8
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 8.2e-77 290.8 201 73.6
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 3.1e-76 288.9 198 74.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 4.1e-76 288.5 200 72.0
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 9.1e-76 287.3 197 75.6
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.5e-75 286.6 201 73.6
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 4.5e-75 285.0 207 74.4
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 5.9e-75 284.6 200 75.5
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 7.7e-75 284.3 216 70.4
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 7.7e-75 284.3 202 71.8
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.0e-74 283.9 196 79.6
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.0e-74 281.6 202 71.8
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 8.5e-74 280.8 199 72.4
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.1e-73 280.4 203 70.4
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 4.2e-73 278.5 206 70.9
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 7.2e-73 277.7 218 67.9
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 9.4e-73 277.3 216 68.1
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 1.2e-72 276.9 215 67.0
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 8.0e-72 274.2 206 74.3
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 8.0e-72 274.2 198 74.2
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.0e-71 273.9 204 77.0
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.0e-71 273.9 204 69.6
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.0e-71 273.9 207 71.0
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.4e-71 273.5 196 77.6
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.4e-71 273.5 197 77.7
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 2.3e-71 272.7 199 72.9
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 2.3e-71 272.7 217 66.4
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 3.0e-71 272.3 207 67.6
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 3.0e-71 272.3 198 70.7
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 3.9e-71 271.9 186 79.0
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 6.7e-71 271.2 205 68.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 6.7e-71 271.2 204 69.1
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 6.7e-71 271.2 203 70.0
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 8.8e-71 270.8 211 66.8
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 1.1e-70 270.4 205 68.8
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.1e-70 270.4 194 79.4
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 1.1e-70 270.4 202 74.8
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.5e-70 270.0 202 73.8
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.5e-70 270.0 194 78.9
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 2.6e-70 269.2 208 68.8
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 9.7e-70 267.3 207 73.9
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 3.7e-69 265.4 202 75.7
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 6.3e-69 264.6 199 69.3
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 6.3e-69 264.6 185 75.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 8.2e-69 264.2 207 66.2
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 8.2e-69 264.2 210 66.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.8e-68 263.1 205 71.7
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 3.1e-68 262.3 206 66.5
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 5.3e-68 261.5 208 72.1
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 5.3e-68 261.5 206 71.8
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 7.0e-68 261.2 206 66.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 7.0e-68 261.2 201 65.2
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 7.0e-68 261.2 189 73.5
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 9.1e-68 260.8 203 68.5
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 2.6e-67 259.2 216 64.4
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 3.5e-67 258.8 179 74.3
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 3.5e-67 258.8 211 63.5
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 5.9e-67 258.1 189 73.0
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 5.9e-67 258.1 199 69.8
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 7.7e-67 257.7 203 67.0
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 1.3e-66 256.9 200 71.5
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 2.2e-66 256.1 204 74.0
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 8.5e-66 254.2 199 66.8
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 8.5e-66 254.2 206 64.6
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 4.2e-65 251.9 201 66.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.2e-64 250.4 200 66.5
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 3.6e-64 248.8 199 72.9
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 8.0e-64 247.7 204 65.2
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 8.0e-64 247.7 204 65.2
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.0e-63 247.3 186 75.8
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.0e-63 247.3 201 67.7
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-63 246.9 200 66.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 3.0e-63 245.7 205 64.9
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 5.2e-63 245.0 199 71.9
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.2e-62 243.8 205 63.9
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.5e-62 243.4 195 71.8
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.5e-62 243.4 194 71.6
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.6e-62 242.7 205 64.4
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 7.5e-62 241.1 213 62.9
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 3.5e-59 232.3 129 86.0
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.5e-59 232.3 129 86.0
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.0e-58 230.7 195 68.2
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.3e-58 230.3 204 62.7
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 2.9e-58 229.2 190 63.7
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.8e-58 228.8 129 85.3
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 8.5e-58 227.6 201 65.7
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 5.5e-57 224.9 134 80.6
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.7e-56 222.6 208 63.9
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.0e-55 220.7 192 69.3
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.4e-55 220.3 126 81.7
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.0e-54 216.5 129 80.6
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 3.7e-53 212.2 157 66.9
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.7e-51 206.1 156 70.5
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 4.5e-51 205.3 158 75.9
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 5.9e-51 204.9 113 83.2
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.3e-50 203.8 127 74.8
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 3.3e-49 199.1 198 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.2e-48 197.2 110 81.8
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.1e-48 196.4 104 87.5
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 4.0e-47 192.2 156 63.5
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 7.5e-46 188.0 106 84.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.3e-45 187.2 91 93.4
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 8.3e-37 157.9 210 47.6
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.0e-34 149.4 82 82.9
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.4e-30 136.0 120 64.2
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 4.9e-29 132.1 101 57.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 9.2e-28 127.9 124 55.6
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.1e-25 120.9 204 47.1
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.9e-25 120.2 59 91.5
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 6.8e-23 111.7 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.7e-21 105.9 98 51.0
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-17 92.8 83 56.6
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 1.7e-13 80.5 100 42.0
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.7e-11 73.2 35 88.6
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 3.5e-11 72.8 85 48.2
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.7e-10 70.5 46 67.4
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 4.3e-09 65.9 83 65.1
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 3.1e-07 59.7 39 69.2
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 5.3e-07 58.9 83 44.6
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.3e-07 58.9 101 44.6


User provided reference genes

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