Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.9e-280 967.6 534 100.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.2e-196 690.3 467 75.6
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.5e-191 673.3 467 69.2
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.9e-190 668.3 543 65.9
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.1e-188 662.9 467 69.6
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.5e-186 656.8 467 70.2
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 2.5e-186 656.0 523 69.2
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 7.3e-186 654.4 545 63.3
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.2e-185 653.7 520 67.5
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.2e-184 648.3 466 69.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.8e-183 644.8 467 69.8
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.7e-182 642.1 467 69.6
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 4.9e-182 641.7 469 66.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.1e-181 640.6 467 67.7
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.9e-181 639.8 519 62.8
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.1e-181 638.6 467 69.6
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.7e-180 636.0 429 73.9
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 3.0e-179 632.5 469 65.2
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.1e-177 626.3 469 65.0
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.8e-177 625.9 469 68.2
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.7e-177 625.2 520 62.7
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-176 623.6 469 66.1
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 5.2e-176 621.7 547 61.6
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.8e-176 621.3 474 64.3
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 8.9e-176 620.9 469 65.0
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.4e-175 619.0 469 66.1
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.6e-175 617.8 469 65.2
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.9e-173 613.2 473 64.3
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.4e-173 612.8 471 66.0
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.2e-173 612.5 522 60.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.3e-171 606.3 491 63.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.5e-170 603.6 469 63.8
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.5e-170 602.8 472 65.3
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 7.3e-170 601.3 502 62.0
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.1e-169 599.7 472 65.0
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-168 597.4 467 65.3
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.8e-168 596.7 556 57.2
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.1e-168 595.9 473 63.2
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.0e-167 593.2 471 67.1
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.3e-166 590.5 505 59.4
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 2.9e-166 589.3 516 59.1
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 4.9e-166 588.6 472 64.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.4e-166 588.2 508 59.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.4e-165 587.0 518 57.5
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 3.2e-165 585.9 471 63.1
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 3.2e-165 585.9 508 58.9
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.6e-164 583.6 560 59.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.5e-164 582.4 485 62.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 6.0e-164 581.6 482 60.6
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.0e-163 580.9 518 57.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.3e-163 580.5 560 56.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.5e-162 577.0 565 55.4
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.6e-162 575.1 525 57.7
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.8e-161 572.8 472 65.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.8e-161 572.0 563 54.4
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 6.9e-160 568.2 472 60.8
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 7.6e-159 564.7 468 60.7
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-158 563.9 468 62.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 3.8e-158 562.4 495 58.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.1e-157 560.8 468 62.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.9e-157 560.1 554 56.3
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 7.1e-157 558.1 513 59.6
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.7e-156 556.2 490 59.4
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.5e-156 555.8 468 61.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 7.9e-156 554.7 409 68.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 7.9e-156 554.7 605 55.9
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.0e-155 552.7 469 62.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 7.4e-154 548.1 541 56.2
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.3e-153 547.4 516 56.0
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.2e-153 545.0 386 69.4
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.2e-153 545.0 481 61.1
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.4e-151 539.3 473 59.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 6.4e-150 535.0 467 60.2
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.4e-150 535.0 469 59.9
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 7.1e-149 531.6 467 56.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 7.1e-149 531.6 468 59.4
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.6e-148 530.4 434 61.1
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.7e-147 525.0 508 59.4
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 8.7e-147 524.6 479 58.0
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.5e-146 523.9 467 60.8
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.6e-146 521.9 471 59.9
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.1e-145 520.0 513 55.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.8e-144 516.9 553 54.2
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.1e-144 516.2 555 55.3
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.9e-144 515.0 489 57.1
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.9e-144 515.0 467 55.9
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-142 510.8 469 56.9
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.3e-142 510.8 508 53.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.7e-142 510.4 326 73.3
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.2e-142 510.0 471 56.9
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.1e-141 507.7 471 56.5
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.3e-141 504.6 496 55.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.1e-140 503.4 471 55.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 3.5e-140 502.7 467 56.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 6.7e-139 498.4 508 52.6
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.5e-138 496.5 471 56.5
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.2e-137 493.4 508 52.6
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 6.9e-136 488.4 434 56.2
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.4e-133 480.7 464 53.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.9e-133 480.3 423 58.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.2e-132 477.6 352 66.8
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 2.7e-132 476.5 492 52.2
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 5.7e-130 468.8 471 53.5
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 9.7e-130 468.0 493 50.9
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.3e-129 467.6 328 65.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 9.1e-128 461.5 425 57.9
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.5e-127 460.7 462 53.5
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.2e-126 456.8 470 52.3
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 9.4e-125 451.4 312 67.3
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.6e-122 443.4 406 53.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.4e-122 442.6 306 67.3
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 4.4e-122 442.6 506 48.2
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 8.2e-121 438.3 462 53.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.8e-120 437.2 518 47.1
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 5.9e-119 432.2 473 49.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.5e-118 428.7 474 48.9
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.5e-117 426.8 256 76.6
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.4e-117 424.9 484 49.2
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.1e-116 423.7 468 48.5
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.0e-115 419.9 310 63.2
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.1e-114 417.9 319 63.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.0e-114 417.2 284 68.3
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.8e-113 413.3 316 60.4
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.4e-112 410.2 427 52.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.0e-107 392.9 449 48.6
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.7e-102 377.5 224 78.1
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.4e-99 367.9 390 52.3
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.7e-95 353.6 454 43.0
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.9e-95 352.4 354 49.4
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.9e-94 350.1 312 52.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.0e-94 349.4 320 51.2
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.0e-94 349.4 306 54.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.5e-93 347.1 413 44.6
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-93 347.1 435 43.4
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.5e-93 347.1 435 43.4
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.3e-93 346.7 304 53.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.2e-92 344.7 429 44.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-92 342.0 414 44.2
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 8.0e-92 342.0 414 44.2
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.4e-91 341.3 397 46.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.3e-91 340.5 334 49.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.6e-90 337.0 236 63.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 4.4e-90 336.3 455 40.2
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 4.4e-90 336.3 455 40.2
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.4e-88 330.5 444 40.5
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.4e-88 330.5 444 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 9.2e-88 328.6 308 50.3
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 9.5e-85 318.5 197 74.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.6e-82 310.5 256 53.5
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 8.0e-76 288.9 290 55.2
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.9e-73 280.4 165 77.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.6e-71 273.1 165 75.2
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 3.4e-66 256.9 257 47.1
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.3e-62 244.2 316 47.8
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 9.3e-56 222.2 282 49.6
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.8e-51 208.0 535 32.5
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 9.9e-50 202.2 124 75.8
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.1e-45 188.7 282 42.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.6e-45 186.4 478 36.6
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.8e-43 181.4 133 64.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.9e-37 161.4 238 37.8
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 9.0e-35 152.5 121 57.0
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.9e-32 144.8 82 80.5
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.9e-30 137.1 523 28.3
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.6e-26 124.4 68 82.4
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.4e-25 119.4 67 82.1
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.9e-24 118.2 61 88.5
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.5e-24 117.9 103 51.5
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 3.9e-22 110.5 94 55.3
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.7e-21 106.7 61 80.3
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 3.7e-20 104.0 223 35.4
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.7e-17 95.1 231 39.8
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.3e-14 84.7 230 32.2
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 3.9e-06 57.4 208 35.6
GSVIVG01014543001 Vitis vinifera HOM05D002303 ORTHO05D007639 5.1e-06 57.0 146 28.8


User provided reference genes

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